ENSXMAG00000007143 (Xiphophorus maculatus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSXMAG00000007143 T244461_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.838 0.838
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.829 0.829
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.829 0.829
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.819 0.819
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.819 0.819
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.819 0.819
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.819 0.819
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.819 0.819
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000007166 IRF 9 114

Links

Other IRF family TFs
Other Xiphophorus maculatus TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I
MDP0000925348 Malus domestica MDP0000925348 I
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I
mgf026186m Mimulus guttatus mgf026186m I
cassava15247.m1 Manihot esculenta cassava15247.m1 I
Pm004396 Prunus mume Pm004396 I
Ca_06495 Cicer arietinum Ca_06495 I
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N
Pm003258 Prunus mume Pm003258 N