POPTR_0003s04520 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0003s04520 T245864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s04520.1 LOB 14 112

Links

Other LOB family TFs
Other Populus trichocarpa TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_25.41 Carica papaya evm.TU.supercontig_25.41 N 0.828
cassava2716.m1 Manihot esculenta cassava2716.m1 N 0.909
cassava34925.m1 Manihot esculenta cassava34925.m1 N 0.899
cassava34926.m1 Manihot esculenta cassava34926.m1 N 0.899
Cucsa.360530 Cucumis sativus Cucsa.360530 N 0.869
mgf019664m Mimulus guttatus mgf019664m N 0.778
Bostr.28625s0323 Boechera stricta Bostr.28625s0323 N 0.798
Cagra.0736s0021 Capsella grandiflora Cagra.0736s0021 N 0.798
Carubv10014142m.g Capsella rubella Carubv10014142m.g N 0.808
28694.m000665 Ricinus communis 28694.m000665 N 0.899
gene23043-v1.0-hybrid Fragaria vesca gene23043-v1.0-hybrid N 0.818
Gorai.011G064500 Gossypium raimondii Gorai.011G064500 N 0.889
Lus10002513.g Linum usitatissimum Lus10002513.g N 0.778
Lus10003789.g Linum usitatissimum Lus10003789.g N 0.798
MDP0000257227 Malus domestica MDP0000257227 N 0.859
SapurV1A.0697s0010 Salix purpurea SapurV1A.0697s0010 N 0.970
Thhalv10021306m.g Eutrema salsugineum Thhalv10021306m.g N 0.778
chr3.CM0049.30.nd Lotus japonicus chr3.CM0049.30.nd N 0.808
PGSC0003DMG400004880 Solanum tuberosum PGSC0003DMG400004880 N 0.838
Bo1g134830 Brassica oleracea Bo1g134830 N 0.768
Bo5g132010 Brassica oleracea Bo5g132010 N 0.778
Bra021513 Brassica rapa Bra021513 N 0.768
LBD22 Arabidopsis lyrata fgenesh2_kg.3__1489__AT3G13850.1 N 0.798
GLYMA07G01170 Glycine max GLYMA07G01170 N 0.828
GLYMA08G20550 Glycine max GLYMA08G20550 N 0.818
GSMUA_Achr3G25850_001 Musa acuminata GSMUA_Achr3G25850_001 N 0.707
MTR_8g017090 Medicago truncatula MTR_8g017090 N 0.818
LBD22 Arabidopsis thaliana AT3G13850 N 0.798
POPTR_0001s20110 Populus trichocarpa POPTR_0001s20110 N 0.980
Solyc06g062630.2 Solanum lycopersicum Solyc06g062630.2 N 0.843
TCM_029050 Theobroma cacao TCM_029050 N 0.828
TCM_029052 Theobroma cacao TCM_029052 N 0.879
Ca_10077 Cicer arietinum Ca_10077 N 0.818
Cla015827 Citrullus lanatus Cla015827 N 0.869
Pm013344 Prunus mume Pm013344 N 0.859