gene23043-v1.0-hybrid (Fragaria vesca)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gene23043-v1.0-hybrid T246925_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23043.1-v1.0-hybrid LOB 33 131

Links

Other LOB family TFs
Other Fragaria vesca TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm013344 Prunus mume Pm013344 N 0.889
Cucsa.360530 Cucumis sativus Cucsa.360530 N 0.859
Cla015827 Citrullus lanatus Cla015827 N 0.848
cassava2716.m1 Manihot esculenta cassava2716.m1 N 0.848
cassava34925.m1 Manihot esculenta cassava34925.m1 N 0.838
cassava34926.m1 Manihot esculenta cassava34926.m1 N 0.838
MDP0000257227 Malus domestica MDP0000257227 N 0.838
28694.m000665 Ricinus communis 28694.m000665 N 0.828
Gorai.011G064500 Gossypium raimondii Gorai.011G064500 N 0.828
PGSC0003DMG400004880 Solanum tuberosum PGSC0003DMG400004880 N 0.818
POPTR_0001s20110 Populus trichocarpa POPTR_0001s20110 N 0.818
POPTR_0003s04520 Populus trichocarpa POPTR_0003s04520 N 0.818
TCM_029052 Theobroma cacao TCM_029052 N 0.818
SapurV1A.0697s0010 Salix purpurea SapurV1A.0697s0010 N 0.808
TCM_029050 Theobroma cacao TCM_029050 N 0.798
Solyc06g062630.2 Solanum lycopersicum Solyc06g062630.2 N 0.786
evm.TU.supercontig_25.41 Carica papaya evm.TU.supercontig_25.41 N 0.778
GLYMA07G01170 Glycine max GLYMA07G01170 N 0.768
MTR_8g017090 Medicago truncatula MTR_8g017090 N 0.758
Ca_10077 Cicer arietinum Ca_10077 N 0.758
chr3.CM0049.30.nd Lotus japonicus chr3.CM0049.30.nd N 0.758
GLYMA08G20550 Glycine max GLYMA08G20550 N 0.747
Lus10003789.g Linum usitatissimum Lus10003789.g N 0.747
LBD22 Arabidopsis lyrata fgenesh2_kg.3__1489__AT3G13850.1 N 0.737
mgf019664m Mimulus guttatus mgf019664m N 0.737
LBD22 Arabidopsis thaliana AT3G13850 N 0.727
Bo5g132010 Brassica oleracea Bo5g132010 N 0.727
Carubv10014142m.g Capsella rubella Carubv10014142m.g N 0.727
Lus10002513.g Linum usitatissimum Lus10002513.g N 0.727
Bostr.28625s0323 Boechera stricta Bostr.28625s0323 N 0.717
Cagra.0736s0021 Capsella grandiflora Cagra.0736s0021 N 0.717
Thhalv10021306m.g Eutrema salsugineum Thhalv10021306m.g N 0.717
Bo1g134830 Brassica oleracea Bo1g134830 N 0.707
Bra021513 Brassica rapa Bra021513 N 0.707