Pavir.Ea00650 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ea00650 T247192_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00650.1.p LOB 4 106

Links

Other LOB family TFs
Other Panicum virgatum TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC234149.1_FG002 Zea mays AC234149.1_FG002 N 0.714
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.776
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.816
AMTR_s00137p00051070 Amborella trichopoda AMTR_s00137p00051070 N 0.704
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.735
LBD40 Arabidopsis thaliana AT1G67100 N 0.778
LBD42 Arabidopsis thaliana AT1G68510 N 0.745
LBD41 Arabidopsis thaliana AT3G02550 N 0.806
LBD38 Arabidopsis thaliana AT3G49940 N 0.714
BGIOSGA001546 Oryza indica BGIOSGA001546 N 0.796
BGIOSGA002703 Oryza indica BGIOSGA002703 N 0.969
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.745
Bo1g003550 Brassica oleracea Bo1g003550 N 0.704
Bo1g156310 Brassica oleracea Bo1g156310 N 0.818
Bo2g055410 Brassica oleracea Bo2g055410 N 0.768
Bo2g168020 Brassica oleracea Bo2g168020 N 0.704
Bo3g055690 Brassica oleracea Bo3g055690 N 0.816
Bo5g132850 Brassica oleracea Bo5g132850 N 0.704
Bo6g106960 Brassica oleracea Bo6g106960 N 0.742
Bo7g063630 Brassica oleracea Bo7g063630 N 0.704
Bo7g099150 Brassica oleracea Bo7g099150 N 0.704
Bo9g019150 Brassica oleracea Bo9g019150 N 0.704
Bra004315 Brassica rapa Bra004315 N 0.742
Bra011772 Brassica rapa Bra011772 N 0.704
Bra012164 Brassica rapa Bra012164 N 0.704
Bra012913 Brassica rapa Bra012913 N 0.704
Bra021433 Brassica rapa Bra021433 N 0.816
Bra031833 Brassica rapa Bra031833 N 0.704
Bra037847 Brassica rapa Bra037847 N 0.704
BRADI4G16740 Brachypodium distachyon BRADI4G16740 N 0.798
BRADI4G16750 Brachypodium distachyon BRADI4G16750 N 0.798
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N 0.745
LBD41 Arabidopsis lyrata fgenesh2_kg.3__191__AT3G02550.1 N 0.806
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.704
GLYMA01G40010 Glycine max GLYMA01G40010 N 0.704
GLYMA05G22120 Glycine max GLYMA05G22120 N 0.714
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.816
GLYMA11G05280 Glycine max GLYMA11G05280 N 0.704
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.837
GLYMA17G17540 Glycine max GLYMA17G17540 N 0.714
GLYMA18G53440 Glycine max GLYMA18G53440 N 0.827
GLYMA19G06280 Glycine max GLYMA19G06280 N 0.816
GRMZM2G060544 Zea mays GRMZM2G060544 N 0.796
GRMZM2G073044 Zea mays GRMZM2G073044 N 0.776
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.959
GRMZM2G386674 Zea mays GRMZM2G386674 N 0.776
GSMUA_Achr1G20970_001 Musa acuminata GSMUA_Achr1G20970_001 N 0.796
GSMUA_Achr2G14600_001 Musa acuminata GSMUA_Achr2G14600_001 N 0.816
GSMUA_Achr2G22720_001 Musa acuminata GSMUA_Achr2G22720_001 N 0.800
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.704
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.816
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.714
GSMUA_Achr4G03700_001 Musa acuminata GSMUA_Achr4G03700_001 N 0.806
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N 0.827
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.816
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.704
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.837
GSMUA_Achr9G21360_001 Musa acuminata GSMUA_Achr9G21360_001 N 0.796
GSMUA_AchrUn_randomG00460_001 Musa acuminata GSMUA_AchrUn_randomG00460_001 N 0.837
LPERR01G01830 Leersia perrieri LPERR01G01830 N 0.969
LPERR01G15290 Leersia perrieri LPERR01G15290 N 0.786
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.714
MLOC_58304 Hordeum vulgare MLOC_58304 N 0.788
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.714
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.806
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.816
OB01G11830 Oryza brachyantha OB01G11830 N 0.969
OB03G31560 Oryza brachyantha OB03G31560 N 0.714
OBART01G01940 Oryza barthii OBART01G01940 N 0.969
OBART01G17510 Oryza barthii OBART01G17510 N 0.796
OBART03G22820 Oryza barthii OBART03G22820 N 0.745
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N 0.969
OGLUM01G20320 Oryza glumaepatula OGLUM01G20320 N 0.796
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.745
OLONG_008015 Oryza longistaminata OLONG_008015 N 0.852
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.745
OMERI01G01380 Oryza meridionalis OMERI01G01380 N 0.959
OMERI01G16320 Oryza meridionalis OMERI01G16320 N 0.796
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.745
ONIVA01G02110 Oryza nivara ONIVA01G02110 N 0.969
ONIVA01G19320 Oryza nivara ONIVA01G19320 N 0.796
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.745
OPUNC01G01670 Oryza punctata OPUNC01G01670 N 0.969
OPUNC01G18000 Oryza punctata OPUNC01G18000 N 0.796
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.745
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N 0.969
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.745
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N 0.969
ORUFI01G19440 Oryza rufipogon ORUFI01G19440 N 0.796
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.745
OS01G0129600 Oryza sativa OS01G0129600 N 0.786
OS01G0511000 Oryza sativa OS01G0511000 N 0.796
OS03G0445700 Oryza sativa OS03G0445700 N 0.745
PGSC0003DMG400005719 Solanum tuberosum PGSC0003DMG400005719 N 0.765
PGSC0003DMG400012653 Solanum tuberosum PGSC0003DMG400012653 N 0.837
PGSC0003DMG400014547 Solanum tuberosum PGSC0003DMG400014547 N 0.806
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.745
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.724
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.816
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.806
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.704
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.714
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N 0.806
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N 0.776
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N 0.724
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N 0.727
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N 0.808
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N 0.714
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N 0.714
Sb01g031790 Sorghum bicolor Sb01g031790 N 0.701
Sb01g032580 Sorghum bicolor Sb01g032580 N 0.786
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.714
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.969
Sb09g025700 Sorghum bicolor Sb09g025700 N 0.724
Sb09g025710 Sorghum bicolor Sb09g025710 N 0.773
Sb09g030780 Sorghum bicolor Sb09g030780 N 0.786
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.714
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.755
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.755
SELMODRAFT_37532 Selaginella moellendorffii SELMODRAFT_37532 N 0.722
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.773
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.773
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N 0.714
Si002412m.g Setaria italica Si002412m.g N 0.949
Si004887m.g Setaria italica Si004887m.g N 0.800
Si022660m.g Setaria italica Si022660m.g N 0.806
Si031011m.g Setaria italica Si031011m.g N 0.704
Solyc02g085910.2 Solanum lycopersicum Solyc02g085910.2 N 0.837
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.745
Solyc03g119530.2 Solanum lycopersicum Solyc03g119530.2 N 0.765
Solyc05g009320.2 Solanum lycopersicum Solyc05g009320.2 N 0.806
TCM_000766 Theobroma cacao TCM_000766 N 0.724
TCM_009888 Theobroma cacao TCM_009888 N 0.796
TCM_012338 Theobroma cacao TCM_012338 N 0.765
TCM_019459 Theobroma cacao TCM_019459 N 0.827
Traes_2AL_450404EA6 Triticum aestivum Traes_2AL_450404EA6 N 0.788
Traes_2BL_3A840DB921 Triticum aestivum Traes_2BL_3A840DB921 N 0.788
Traes_2DL_9D8B5B436 Triticum aestivum Traes_2DL_9D8B5B436 N 0.788
TRAES3BF008500030CFD_g Triticum aestivum TRAES3BF008500030CFD_g N 0.776
TRAES3BF008600030CFD_g Triticum aestivum TRAES3BF008600030CFD_g N 0.776
Traes_4BL_7F70575F9 Triticum aestivum Traes_4BL_7F70575F9 N 0.704
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.900
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N 0.745
VIT_01s0011g03530 Vitis vinifera VIT_01s0011g03530 N 0.755
VIT_01s0011g03540 Vitis vinifera VIT_01s0011g03540 N 0.786
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.714
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N 0.798
VIT_17s0000g03720 Vitis vinifera VIT_17s0000g03720 N 0.837
Ca_09342 Cicer arietinum Ca_09342 N 0.724
Ca_22996 Cicer arietinum Ca_22996 N 0.808
Cla007208 Citrullus lanatus Cla007208 N 0.816
Cla019264 Citrullus lanatus Cla019264 N 0.765
Cla020705 Citrullus lanatus Cla020705 N 0.765
Pm005389 Prunus mume Pm005389 N 0.714
Pm029059 Prunus mume Pm029059 N 0.714
27524.m000293 Ricinus communis 27524.m000293 N 0.857
28207.m000107 Ricinus communis 28207.m000107 N 0.806
29661.m000902 Ricinus communis 29661.m000902 N 0.735
30170.m013752 Ricinus communis 30170.m013752 N 0.714
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.724
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.735
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N 0.714
cassava38982.m1 Manihot esculenta cassava38982.m1 N 0.827
cassava43296.valid.m1 Manihot esculenta cassava43296.valid.m1 N 0.816
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N 0.827
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.827
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.745
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.816
Cucsa.199060 Cucumis sativus Cucsa.199060 N 0.765
Cucsa.283560 Cucumis sativus Cucsa.283560 N 0.765
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.755
estExt_gwp_gw1.C_2030014 Physcomitrella patens estExt_gwp_gw1.C_2030014 N 0.714
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.755
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.735
mgf007319m Mimulus guttatus mgf007319m N 0.735
mgf010898m Mimulus guttatus mgf010898m N 0.816
mgf011656m Mimulus guttatus mgf011656m N 0.786
mgf016064m Mimulus guttatus mgf016064m N 0.724
mgf017960m Mimulus guttatus mgf017960m N 0.745
mgf021653m Mimulus guttatus mgf021653m N 0.722
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.816
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N 0.714
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.704
Bostr.1460s0172 Boechera stricta Bostr.1460s0172 N 0.798
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N 0.755
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N 0.778
Bostr.2902s0344 Boechera stricta Bostr.2902s0344 N 0.755
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.704
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N 0.704
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.704
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N 0.714
Cagra.1194s0049 Capsella grandiflora Cagra.1194s0049 N 0.798
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N 0.742
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.714
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N 0.778
Cagra.6845s0054 Capsella grandiflora Cagra.6845s0054 N 0.747
Carubv10000015m.g Capsella rubella Carubv10000015m.g N 0.755
Carubv10002654m.g Capsella rubella Carubv10002654m.g N 0.765
Carubv10005616m.g Capsella rubella Carubv10005616m.g N 0.714
Carubv10015363m.g Capsella rubella Carubv10015363m.g N 0.798
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.714
Carubv10021721m.g Capsella rubella Carubv10021721m.g N 0.778
Carubv10022391m.g Capsella rubella Carubv10022391m.g N 0.742
Carubv10027507m.g Capsella rubella Carubv10027507m.g N 0.714
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N 0.806
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N 0.747
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N 0.765
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.724
Eucgr.B03016 Eucalyptus grandis Eucgr.B03016 N 0.707
Eucgr.F02492 Eucalyptus grandis Eucgr.F02492 N 0.796
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.806
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.724
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N 0.796
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.724
evm.TU.supercontig_1.42 Carica papaya evm.TU.supercontig_1.42 N 0.755
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.827
evm.TU.supercontig_3.514 Carica papaya evm.TU.supercontig_3.514 N 0.755
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.724
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N 0.724
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N 0.724
gene10300-v1.0-hybrid Fragaria vesca gene10300-v1.0-hybrid N 0.818
Gorai.002G217800 Gossypium raimondii Gorai.002G217800 N 0.796
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N 0.786
Gorai.006G061200 Gossypium raimondii Gorai.006G061200 N 0.714
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.724
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N 0.808
Lus10011530.g Linum usitatissimum Lus10011530.g N 0.714
Lus10019292.g Linum usitatissimum Lus10019292.g N 0.714
Lus10028470.g Linum usitatissimum Lus10028470.g N 0.796
MDP0000136037 Malus domestica MDP0000136037 N 0.808
MDP0000233303 Malus domestica MDP0000233303 N 0.724
MDP0000487015 Malus domestica MDP0000487015 N 0.704
MDP0000581845 Malus domestica MDP0000581845 N 0.714
MDP0000591819 Malus domestica MDP0000591819 N 0.714
MDP0000747679 Malus domestica MDP0000747679 N 0.704
MDP0000794101 Malus domestica MDP0000794101 N 0.714
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 0.806
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.724
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N 0.765
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N 0.745
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.704
Pavir.Ea01295 Panicum virgatum Pavir.Ea01295 N 0.796
Pavir.Eb02390 Panicum virgatum Pavir.Eb02390 N 0.768
Pavir.J00526 Panicum virgatum Pavir.J00526 N 0.806
Pavir.J01483 Panicum virgatum Pavir.J01483 N 0.816
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.969
Pavir.J18418 Panicum virgatum Pavir.J18418 N 0.704
SapurV1A.0078s0410 Salix purpurea SapurV1A.0078s0410 N 0.776
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N 0.786
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.714
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.796
SapurV1A.0845s0090 Salix purpurea SapurV1A.0845s0090 N 0.714
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N 0.776
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N 0.714
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.704
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.704
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N 0.778
Thhalv10019494m.g Eutrema salsugineum Thhalv10019494m.g N 0.776
Thhalv10021328m.g Eutrema salsugineum Thhalv10021328m.g N 0.798
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.704
PK03075.1 Cannabis sativa PK03075.1 N 0.701
PK03169.1 Cannabis sativa PK03169.1 N 0.806
PK04548.1 Cannabis sativa PK04548.1 N 0.704
PK04625.1 Cannabis sativa PK04625.1 N 0.837
PK25954.1 Cannabis sativa PK25954.1 N 0.739
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N 0.798
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N 0.714
chr5.CM0200.600.nd Lotus japonicus chr5.CM0200.600.nd N 0.704
LjSGA_023437.1 Lotus japonicus LjSGA_023437.1 N 0.704