Carubv10014421m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10014421m.g T250625_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.901 0.731
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.901 0.731
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014421m MADF 38 110
Carubv10014453m MADF 38 110

Links

Other MADF family TFs
Other Capsella rubella TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.901
Cla015773 Citrullus lanatus Cla015773 I 0.820
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.922
29814.m000741 Ricinus communis 29814.m000741 I 0.880
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.820
mgf000047m Mimulus guttatus mgf000047m I 0.833
mgf006505m Mimulus guttatus mgf006505m I 0.855
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.826
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.908
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.923
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.878
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.865
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.862
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.901
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.862
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.879
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.923
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.828
Bo5g136850 Brassica oleracea Bo5g136850 I 0.922
Bo9g177060 Brassica oleracea Bo9g177060 I 0.851
Bra009119 Brassica rapa Bra009119 I 0.826
Bra034165 Brassica rapa Bra034165 I 0.932
Bra034866 Brassica rapa Bra034866 I 0.939
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.835
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.830
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.863
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.847
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.863
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.907
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.923
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.847
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.879
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.813
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.866
MDP0000097759 Malus domestica MDP0000097759 N 0.878
MDP0000943251 Malus domestica MDP0000943251 N 0.852
TCM_042467 Theobroma cacao TCM_042467 N 0.858