MDP0000193129 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000193129 T258678_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000193129 MADS box 377 424

Links

Other MADS box family TFs
Other Malus domestica TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.812
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.771
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.708
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.792
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.792
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.708
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.812
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.708
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.729
mgf017317m Mimulus guttatus mgf017317m I 0.708
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.958
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.854
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.708
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
30138.m004061 Ricinus communis 30138.m004061 I 0.854
Pm024895 Prunus mume Pm024895 I 0.958
Cla018884 Citrullus lanatus Cla018884 I 0.771
Ca_01572 Cicer arietinum Ca_01572 I 0.729
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.833
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.750
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.766
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.812
PK21701.1 Cannabis sativa PK21701.1 I 0.812
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.833
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.708
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.792
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.750
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.812
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
MDP0000919323 Malus domestica MDP0000919323 I 0.711
MDP0000773068 Malus domestica MDP0000773068 I 0.711
MDP0000146415 Malus domestica MDP0000146415 I 0.711
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.854
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.833
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.812
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.812
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.783
Bra016544 Brassica rapa Bra016544 I 0.833
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.708
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.783
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.708
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.708
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.792
F775_13266 Aegilops tauschii F775_13266 I 0.783
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.729
Bra031049 Brassica rapa Bra031049 I 0.833
Bra025685 Brassica rapa Bra025685 I 0.792
Bra024792 Brassica rapa Bra024792 I 0.717
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.708
Bra015643 Brassica rapa Bra015643 I 0.708
Bo8g104060 Brassica oleracea Bo8g104060 I 0.833
Bo8g068060 Brassica oleracea Bo8g068060 I 0.833
Bo7g080890 Brassica oleracea Bo7g080890 I 0.717
Bo6g121640 Brassica oleracea Bo6g121640 I 0.708
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
AGL66 Arabidopsis thaliana AT1G77980 I 0.708
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.729
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.783
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.771
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.729
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.771
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.783
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.708
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.783
TCM_014051 Theobroma cacao TCM_014051 I 0.854
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.708
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.958
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.783
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.708
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.729
Solyc05g051830.2 Solanum lycopersicum Solyc05g051830.2 N 0.708
Si028357m.g Setaria italica Si028357m.g N 0.739
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.739
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.708