Pm024895 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm024895 T257078_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.826 0.826
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm024895 MADS box 366 411

Links

Other MADS box family TFs
Other Prunus mume TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 1.000
MDP0000193129 Malus domestica MDP0000193129 I 0.958
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.957
TCM_014051 Theobroma cacao TCM_014051 I 0.848
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.848
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.848
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.833
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.833
Bo8g068060 Brassica oleracea Bo8g068060 I 0.812
Bo8g104060 Brassica oleracea Bo8g104060 I 0.812
Bra016544 Brassica rapa Bra016544 I 0.812
Bra031049 Brassica rapa Bra031049 I 0.812
30138.m004061 Ricinus communis 30138.m004061 I 0.812
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.812
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.812
Bra025685 Brassica rapa Bra025685 I 0.809
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.809
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.804
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.804
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
AGL65 Arabidopsis thaliana AT1G18750 D 0.792
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.792
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.792
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.792
PK21701.1 Cannabis sativa PK21701.1 I 0.792
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
F775_13266 Aegilops tauschii F775_13266 I 0.783
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.783
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.783
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.783
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.783
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.783
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.783
Cla018884 Citrullus lanatus Cla018884 I 0.783
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.783
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.771
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.771
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.771
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.771
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.771
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.771
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.771
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.766
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.766
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.766
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.761
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.761
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.739
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.739
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.739
Si028357m.g Setaria italica Si028357m.g N 0.739
Solyc05g051830.2 Solanum lycopersicum Solyc05g051830.2 N 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 0.717
Bra024792 Brassica rapa Bra024792 I 0.717
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.717
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.717
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.717
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.717
OBART11G21780 Oryza barthii OBART11G21780 N 0.717
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.717
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.717
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.717
OS11G0658700 Oryza sativa OS11G0658700 N 0.717
Cla010361 Citrullus lanatus Cla010361 I 0.717
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.717
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.717
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
MDP0000146415 Malus domestica MDP0000146415 I 0.711
MDP0000773068 Malus domestica MDP0000773068 I 0.711
MDP0000919323 Malus domestica MDP0000919323 I 0.711
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.708