Cucsa.284960 (Cucumis sativus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cucsa.284960 T257288_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.284960.1 MADS box 10 55

Links

Other MADS box family TFs
Other Cucumis sativus TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla010361 Citrullus lanatus Cla010361 I 0.957
MDP0000146231 Malus domestica MDP0000146231 I 0.891
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.870
Ca_18082 Cicer arietinum Ca_18082 I 0.870
MDP0000147667 Malus domestica MDP0000147667 I 0.870
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.848
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.848
Ca_16376 Cicer arietinum Ca_16376 I 0.848
Pm006479 Prunus mume Pm006479 I 0.848
29813.m001508 Ricinus communis 29813.m001508 I 0.848
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.848
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.848
MDP0000146415 Malus domestica MDP0000146415 I 0.848
MDP0000773068 Malus domestica MDP0000773068 I 0.848
MDP0000919323 Malus domestica MDP0000919323 I 0.848
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.848
PK03147.1 Cannabis sativa PK03147.1 I 0.848
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.848
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.848
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.826
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.826
TCM_011687 Theobroma cacao TCM_011687 I 0.826
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.826
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.826
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.826
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.826
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
AGL30 Arabidopsis thaliana AT2G03060 I 0.804
Bo8g068060 Brassica oleracea Bo8g068060 I 0.804
Bo8g104060 Brassica oleracea Bo8g104060 I 0.804
Bra016544 Brassica rapa Bra016544 I 0.804
Bra025685 Brassica rapa Bra025685 I 0.804
Bra031049 Brassica rapa Bra031049 I 0.804
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.804
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.804
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.804
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.804
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.804
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.804
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.804
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.804
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.783
Bo9g072860 Brassica oleracea Bo9g072860 N 0.783
TCM_014051 Theobroma cacao TCM_014051 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.783
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.783
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.783
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.783
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.783
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.783
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.783
AGL65 Arabidopsis thaliana AT1G18750 D 0.761
Bra017404 Brassica rapa Bra017404 I 0.761
F775_13266 Aegilops tauschii F775_13266 I 0.761
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.761
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.761
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.761
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.761
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.761
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.761
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.761
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.761
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.761
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.761
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.761
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.761
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.761
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.761
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.761
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.761
PK21701.1 Cannabis sativa PK21701.1 I 0.761
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Bra004393 Brassica rapa Bra004393 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.739
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.739
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.739
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.739
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.739
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
Pm024895 Prunus mume Pm024895 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.739
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.739
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.739
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.739
MDP0000193129 Malus domestica MDP0000193129 I 0.739
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.739
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.717
AGL94 Arabidopsis thaliana AT1G69540 N 0.717
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.717
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.717
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.717
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.717
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.717
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717