cassava12018.valid.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava12018.valid.m1 T257174_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12018.valid.m1 MADS box 15 61

Links

Other MADS box family TFs
Other Manihot esculenta TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I 0.935
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.935
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.913
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.913
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.913
PK03147.1 Cannabis sativa PK03147.1 I 0.913
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.891
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.891
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.891
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.891
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.870
TCM_011687 Theobroma cacao TCM_011687 I 0.870
Ca_16376 Cicer arietinum Ca_16376 I 0.870
Cla010361 Citrullus lanatus Cla010361 I 0.870
Pm006479 Prunus mume Pm006479 I 0.870
MDP0000146231 Malus domestica MDP0000146231 I 0.870
MDP0000146415 Malus domestica MDP0000146415 I 0.867
MDP0000773068 Malus domestica MDP0000773068 I 0.867
MDP0000919323 Malus domestica MDP0000919323 I 0.867
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.851
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.848
Ca_18082 Cicer arietinum Ca_18082 I 0.848
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.848
MDP0000147667 Malus domestica MDP0000147667 I 0.848
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.830
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.826
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.826
Bo9g072860 Brassica oleracea Bo9g072860 N 0.804
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.804
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.804
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.804
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.786
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
Bo7g080890 Brassica oleracea Bo7g080890 I 0.783
Bra017404 Brassica rapa Bra017404 I 0.783
Bra024792 Brassica rapa Bra024792 I 0.783
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.783
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.783
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.783
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.783
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.783
Bra025685 Brassica rapa Bra025685 I 0.766
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.761
AGL94 Arabidopsis thaliana AT1G69540 N 0.761
AGL30 Arabidopsis thaliana AT2G03060 I 0.761
Bo6g109050 Brassica oleracea Bo6g109050 I 0.761
Bra004393 Brassica rapa Bra004393 I 0.761
F775_13266 Aegilops tauschii F775_13266 I 0.761
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.761
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.761
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.761
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.761
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.761
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.761
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.745
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.745
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.745
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.745
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.739
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.729
Bra016544 Brassica rapa Bra016544 I 0.729
Bra031049 Brassica rapa Bra031049 I 0.729
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.729
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.717
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.717
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
TCM_014051 Theobroma cacao TCM_014051 I 0.708
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.708