TCM_011687 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_011687 T256444_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY01895 MADS box 10 55

Links

Other MADS box family TFs
Other Theobroma cacao TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.957
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.957
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.957
PK03147.1 Cannabis sativa PK03147.1 I 0.957
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.935
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.935
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.935
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.935
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.913
Pm006479 Prunus mume Pm006479 I 0.913
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.913
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.913
MDP0000146231 Malus domestica MDP0000146231 I 0.913
Ca_16376 Cicer arietinum Ca_16376 I 0.891
29813.m001508 Ricinus communis 29813.m001508 I 0.891
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.891
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.891
MDP0000146415 Malus domestica MDP0000146415 I 0.891
MDP0000147667 Malus domestica MDP0000147667 I 0.891
MDP0000773068 Malus domestica MDP0000773068 I 0.891
MDP0000919323 Malus domestica MDP0000919323 I 0.891
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.870
Ca_18082 Cicer arietinum Ca_18082 I 0.870
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.870
Bo9g072860 Brassica oleracea Bo9g072860 N 0.848
Cla010361 Citrullus lanatus Cla010361 I 0.848
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.848
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.848
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.848
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.848
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.848
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.848
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
AGL30 Arabidopsis thaliana AT2G03060 I 0.826
Bra017404 Brassica rapa Bra017404 I 0.826
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.826
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.826
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.804
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.804
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.804
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.804
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.783
Bo7g080890 Brassica oleracea Bo7g080890 I 0.783
Bra024792 Brassica rapa Bra024792 I 0.783
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.783
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.783
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.783
AGL94 Arabidopsis thaliana AT1G69540 N 0.761
Bo8g068060 Brassica oleracea Bo8g068060 I 0.761
Bo8g104060 Brassica oleracea Bo8g104060 I 0.761
Bra016544 Brassica rapa Bra016544 I 0.761
Bra025685 Brassica rapa Bra025685 I 0.761
Bra031049 Brassica rapa Bra031049 I 0.761
F775_13266 Aegilops tauschii F775_13266 I 0.761
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.761
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.761
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.761
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.761
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.761
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.761
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.761
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.761
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bra004393 Brassica rapa Bra004393 I 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.739
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.739
TCM_014051 Theobroma cacao TCM_014051 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
30138.m004061 Ricinus communis 30138.m004061 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.739
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.717
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.717
OBART11G21780 Oryza barthii OBART11G21780 N 0.717
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.717
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.717
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.717
OS11G0658700 Oryza sativa OS11G0658700 N 0.717
Si028357m.g Setaria italica Si028357m.g N 0.717
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.717
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.717