Bo6g109050 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo6g109050 T253150_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g109050.1 MADS box 87 132

Links

Other MADS box family TFs
Other Brassica oleracea TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra004393 Brassica rapa Bra004393 I 1.000
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.870
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.848
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
Ca_16376 Cicer arietinum Ca_16376 I 0.804
MDP0000146415 Malus domestica MDP0000146415 I 0.804
MDP0000147667 Malus domestica MDP0000147667 I 0.804
MDP0000773068 Malus domestica MDP0000773068 I 0.804
MDP0000919323 Malus domestica MDP0000919323 I 0.804
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.783
AGL94 Arabidopsis thaliana AT1G69540 N 0.783
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.783
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.783
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.783
Ca_18082 Cicer arietinum Ca_18082 I 0.783
Cla010361 Citrullus lanatus Cla010361 I 0.783
Pm006479 Prunus mume Pm006479 I 0.783
29813.m001508 Ricinus communis 29813.m001508 I 0.783
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.783
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.783
MDP0000146231 Malus domestica MDP0000146231 I 0.783
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.783
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.783
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.783
PK03147.1 Cannabis sativa PK03147.1 I 0.783
Bo9g072860 Brassica oleracea Bo9g072860 N 0.761
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.761
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.739
Bra016544 Brassica rapa Bra016544 I 0.739
Bra017404 Brassica rapa Bra017404 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.739
Bra031049 Brassica rapa Bra031049 I 0.739
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.739
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.739
TCM_011687 Theobroma cacao TCM_011687 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.739
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.739
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
PK21701.1 Cannabis sativa PK21701.1 I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.717
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
Bra025685 Brassica rapa Bra025685 I 0.717
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
30138.m004061 Ricinus communis 30138.m004061 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.717
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.717
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717