MTR_5g041650 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_5g041650 T254797_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES96803 MADS box 47 92

Links

Other MADS box family TFs
Other Medicago truncatula TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_18082 Cicer arietinum Ca_18082 I 1.000
Ca_16376 Cicer arietinum Ca_16376 I 0.957
MDP0000146231 Malus domestica MDP0000146231 I 0.957
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.957
MDP0000147667 Malus domestica MDP0000147667 I 0.935
MDP0000146415 Malus domestica MDP0000146415 I 0.933
MDP0000773068 Malus domestica MDP0000773068 I 0.933
MDP0000919323 Malus domestica MDP0000919323 I 0.933
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.913
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.913
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.913
Cla010361 Citrullus lanatus Cla010361 I 0.913
Pm006479 Prunus mume Pm006479 I 0.913
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.913
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.913
PK03147.1 Cannabis sativa PK03147.1 I 0.913
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.891
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.891
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.891
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.891
Bra017404 Brassica rapa Bra017404 I 0.870
TCM_011687 Theobroma cacao TCM_011687 I 0.870
29813.m001508 Ricinus communis 29813.m001508 I 0.870
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.870
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.870
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.870
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.848
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.848
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.848
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.848
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.830
Bo7g080890 Brassica oleracea Bo7g080890 I 0.826
Bra024792 Brassica rapa Bra024792 I 0.826
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.826
AGL30 Arabidopsis thaliana AT2G03060 I 0.804
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.804
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.804
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.804
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.783
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
Bra004393 Brassica rapa Bra004393 I 0.783
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.783
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.783
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
Bra025685 Brassica rapa Bra025685 I 0.761
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.750
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.745
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
F775_13266 Aegilops tauschii F775_13266 I 0.739
TCM_014051 Theobroma cacao TCM_014051 I 0.739
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.739
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.739
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.739
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.739
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.729
Bra016544 Brassica rapa Bra016544 I 0.729
Bra031049 Brassica rapa Bra031049 I 0.729
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.717
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.717
AGL65 Arabidopsis thaliana AT1G18750 D 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.708
30138.m004061 Ricinus communis 30138.m004061 I 0.708
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.708
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.708
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.708
PK21701.1 Cannabis sativa PK21701.1 I 0.708
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702