Bo7g080890 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo7g080890 T253163_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g080890.1 MADS box 10 55

Links

Other MADS box family TFs
Other Brassica oleracea TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra024792 Brassica rapa Bra024792 I 1.000
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
Bra017404 Brassica rapa Bra017404 I 0.870
MDP0000146415 Malus domestica MDP0000146415 I 0.867
MDP0000773068 Malus domestica MDP0000773068 I 0.867
MDP0000919323 Malus domestica MDP0000919323 I 0.867
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.848
AGL30 Arabidopsis thaliana AT2G03060 I 0.848
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.848
MDP0000147667 Malus domestica MDP0000147667 I 0.848
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.848
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.826
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.826
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.826
Ca_16376 Cicer arietinum Ca_16376 I 0.826
Ca_18082 Cicer arietinum Ca_18082 I 0.826
Pm006479 Prunus mume Pm006479 I 0.826
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.826
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.826
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.826
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.826
MDP0000146231 Malus domestica MDP0000146231 I 0.826
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.826
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.826
PK03147.1 Cannabis sativa PK03147.1 I 0.826
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.826
29813.m001508 Ricinus communis 29813.m001508 I 0.804
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.804
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.804
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.804
TCM_011687 Theobroma cacao TCM_011687 I 0.783
Cla010361 Citrullus lanatus Cla010361 I 0.783
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.783
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.783
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.783
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.783
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.761
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.761
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.761
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.761
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.761
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.761
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.761
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.761
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.745
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.739
Bra004393 Brassica rapa Bra004393 I 0.739
Bra016544 Brassica rapa Bra016544 I 0.739
Bra031049 Brassica rapa Bra031049 I 0.739
F775_13266 Aegilops tauschii F775_13266 I 0.739
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.739
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.739
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.739
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.739
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.739
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.739
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.739
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.723
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.717
Bra025685 Brassica rapa Bra025685 I 0.717
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.717
Pm024895 Prunus mume Pm024895 I 0.717
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.717
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.717
MDP0000193129 Malus domestica MDP0000193129 I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.717
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717