Cagra.0534s0009 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.0534s0009 T257658_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0534s0009.1.p MADS box 10 55
Cagra.0534s0009.2.p MADS box 10 55

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 1.000
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.978
AGL30 Arabidopsis thaliana AT2G03060 I 0.957
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.935
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.891
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.891
Bra017404 Brassica rapa Bra017404 I 0.870
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.870
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.870
Pm006479 Prunus mume Pm006479 I 0.870
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.870
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.870
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.870
PK03147.1 Cannabis sativa PK03147.1 I 0.870
MDP0000146415 Malus domestica MDP0000146415 I 0.867
MDP0000773068 Malus domestica MDP0000773068 I 0.867
MDP0000919323 Malus domestica MDP0000919323 I 0.867
Bo9g072860 Brassica oleracea Bo9g072860 N 0.848
TCM_011687 Theobroma cacao TCM_011687 I 0.848
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.848
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.848
MDP0000147667 Malus domestica MDP0000147667 I 0.848
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.848
Bo7g080890 Brassica oleracea Bo7g080890 I 0.826
Bra024792 Brassica rapa Bra024792 I 0.826
29813.m001508 Ricinus communis 29813.m001508 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
MDP0000146231 Malus domestica MDP0000146231 I 0.826
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
Ca_16376 Cicer arietinum Ca_16376 I 0.804
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.804
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.804
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.804
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.787
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.783
Ca_18082 Cicer arietinum Ca_18082 I 0.783
Cla010361 Citrullus lanatus Cla010361 I 0.783
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.783
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.783
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.783
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.783
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.783
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.771
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.771
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.766
AGL94 Arabidopsis thaliana AT1G69540 N 0.761
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.761
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.745
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.739
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.739
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.729
Bo8g068060 Brassica oleracea Bo8g068060 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.729
Bra016544 Brassica rapa Bra016544 I 0.729
Bra031049 Brassica rapa Bra031049 I 0.729
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.729
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.729
Bra025685 Brassica rapa Bra025685 I 0.723
F775_13266 Aegilops tauschii F775_13266 I 0.717
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.717
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.717
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.717
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.717
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.717
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.717
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.717
Cla018884 Citrullus lanatus Cla018884 I 0.717
Pm024895 Prunus mume Pm024895 I 0.717
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.717
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.714
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.708
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.708
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.708
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.702
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.702
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.702