Carubv10020210m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10020210m.g T257790_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020210m MADS box 27 72
Carubv10020226m MADS box 19 64

Links

Other MADS box family TFs
Other Capsella rubella TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.978
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.913
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.891
AGL94 Arabidopsis thaliana AT1G69540 N 0.870
Bo6g109050 Brassica oleracea Bo6g109050 I 0.848
Bra004393 Brassica rapa Bra004393 I 0.848
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.826
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.804
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.804
Pm006479 Prunus mume Pm006479 I 0.804
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.804
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.804
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.804
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.804
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.804
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.804
PK03147.1 Cannabis sativa PK03147.1 I 0.804
AGL30 Arabidopsis thaliana AT2G03060 I 0.783
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.783
TCM_011687 Theobroma cacao TCM_011687 I 0.783
29813.m001508 Ricinus communis 29813.m001508 I 0.783
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.783
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.783
MDP0000146415 Malus domestica MDP0000146415 I 0.783
MDP0000147667 Malus domestica MDP0000147667 I 0.783
MDP0000773068 Malus domestica MDP0000773068 I 0.783
MDP0000919323 Malus domestica MDP0000919323 I 0.783
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.783
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.761
Ca_16376 Cicer arietinum Ca_16376 I 0.761
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.761
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.761
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.761
MDP0000146231 Malus domestica MDP0000146231 I 0.761
AGL65 Arabidopsis thaliana AT1G18750 D 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.739
Bra016544 Brassica rapa Bra016544 I 0.739
Bra017404 Brassica rapa Bra017404 I 0.739
Bra031049 Brassica rapa Bra031049 I 0.739
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.739
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.739
Ca_18082 Cicer arietinum Ca_18082 I 0.739
Cla010361 Citrullus lanatus Cla010361 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.739
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.739
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.739
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.739
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.739
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 0.717
Bo9g072860 Brassica oleracea Bo9g072860 N 0.717
Bra024792 Brassica rapa Bra024792 I 0.717
Bra025685 Brassica rapa Bra025685 I 0.717
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.717
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717