Ca_18082 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_18082 T256921_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_18082 MADS box 19 64

Links

Other MADS box family TFs
Other Cicer arietinum TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_5g041650 Medicago truncatula MTR_5g041650 I 1.000
MDP0000146231 Malus domestica MDP0000146231 I 0.957
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.957
Ca_16376 Cicer arietinum Ca_16376 I 0.957
MDP0000147667 Malus domestica MDP0000147667 I 0.935
MDP0000146415 Malus domestica MDP0000146415 I 0.933
MDP0000773068 Malus domestica MDP0000773068 I 0.933
MDP0000919323 Malus domestica MDP0000919323 I 0.933
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.913
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.913
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.913
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.913
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.913
PK03147.1 Cannabis sativa PK03147.1 I 0.913
Pm006479 Prunus mume Pm006479 I 0.913
Cla010361 Citrullus lanatus Cla010361 I 0.913
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.891
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.891
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.891
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.891
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.870
Bra017404 Brassica rapa Bra017404 I 0.870
29813.m001508 Ricinus communis 29813.m001508 I 0.870
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.870
TCM_011687 Theobroma cacao TCM_011687 I 0.870
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.870
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.848
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.848
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.848
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.848
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.830
Bo7g080890 Brassica oleracea Bo7g080890 I 0.826
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.826
Bra024792 Brassica rapa Bra024792 I 0.826
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.804
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.804
AGL30 Arabidopsis thaliana AT2G03060 I 0.804
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.804
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.783
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.783
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.783
Bra004393 Brassica rapa Bra004393 I 0.783
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
Bra025685 Brassica rapa Bra025685 I 0.761
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.750
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.745
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.739
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.739
TCM_014051 Theobroma cacao TCM_014051 I 0.739
F775_13266 Aegilops tauschii F775_13266 I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.739
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.739
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.739
Bra031049 Brassica rapa Bra031049 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.729
Bra016544 Brassica rapa Bra016544 I 0.729
Bo8g068060 Brassica oleracea Bo8g068060 I 0.729
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.717
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.717
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.717
PK21701.1 Cannabis sativa PK21701.1 I 0.708
30138.m004061 Ricinus communis 30138.m004061 I 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.708
AGL65 Arabidopsis thaliana AT1G18750 D 0.708
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.708
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.708
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.708
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702