Carubv10009517m.g (Capsella rubella)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Carubv10009517m.g T261462_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009517m MBD 4 77

Links

Other MBD family TFs
Other Capsella rubella TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.730
Pm027560 Prunus mume Pm027560 N 0.712
29841.m002855 Ricinus communis 29841.m002855 N 0.757
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.743
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.743
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.753
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.743
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.973
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 1.000
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.707
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.833
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.703
Cla012920 Citrullus lanatus Cla012920 N 0.730
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.784
MDP0000152128 Malus domestica MDP0000152128 N 0.716
MDP0000301302 Malus domestica MDP0000301302 N 0.707
MDP0000375866 Malus domestica MDP0000375866 N 0.716
MDP0000574053 Malus domestica MDP0000574053 N 0.716
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.716
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.946
PK04144.1 Cannabis sativa PK04144.1 N 0.743
PK24888.1 Cannabis sativa PK24888.1 N 0.757
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.746
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.730
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.716
MBD11 Arabidopsis thaliana AT3G15790 N 0.767
Bo8g066360 Brassica oleracea Bo8g066360 N 0.919
Bo8g106130 Brassica oleracea Bo8g106130 N 0.784
Bra016665 Brassica rapa Bra016665 N 0.919
Bra021136 Brassica rapa Bra021136 N 0.743
Bra026773 Brassica rapa Bra026773 N 0.764
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.959
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.740
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.716
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.716
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.703
MBD10 Arabidopsis thaliana AT1G15340 N 0.946
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.767
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.767
MTR_4g010210 Medicago truncatula MTR_4g010210 N 0.724
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.716
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.767
TCM_027169 Theobroma cacao TCM_027169 N 0.764
TCM_038107 Theobroma cacao TCM_038107 N 0.703
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.778
Ca_06682 Cicer arietinum Ca_06682 N 0.740
Ca_19192 Cicer arietinum Ca_19192 N 0.784