Ca_12052 (Cicer arietinum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Ca_12052 T324046_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_12052 Sigma 70 319 389

Links

Other Sigma 70 family TFs
Other Cicer arietinum TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.817
30078.m002307 Ricinus communis 30078.m002307 N 0.817
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.803
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.761
mgf007606m Mimulus guttatus mgf007606m N 0.775
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.761
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.761
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.761
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.789
Pm030137 Prunus mume Pm030137 N 0.803
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.775
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.803
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.789
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.803
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.789
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.761
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.831
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.732
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.761
SIGF Arabidopsis thaliana AT2G36990 N 0.761
Bo4g186560 Brassica oleracea Bo4g186560 N 0.761
Bra017213 Brassica rapa Bra017213 N 0.746
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.761
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.761
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.761
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.761
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.746
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.761
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.958
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.817
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.775
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.803
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.817
TCM_022198 Theobroma cacao TCM_022198 N 0.775
SIGF Vitis vinifera VIT_08s0040g01560 N 0.789
Cla018594 Citrullus lanatus Cla018594 N 0.817