Solyc08g082070.2 (Solanum lycopersicum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Solyc08g082070.2 T332695_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.463 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.463 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g082070.2.1 Sox 175 239
Solyc08g082070.2.1 Sox 292 359
Solyc08g082070.2.1 Sox 420 488

Links

Other Sox family TFs
Other Solanum lycopersicum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB98 Arabidopsis thaliana AT4G18770 D
MYB118 Arabidopsis thaliana AT3G27785 D
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I
Pm000541 Prunus mume Pm000541 I
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I
Carubv10018693m.g Capsella rubella Carubv10018693m.g I
Carubv10006734m.g Capsella rubella Carubv10006734m.g I
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I
mgf024290m Mimulus guttatus mgf024290m I
Cucsa.196850 Cucumis sativus Cucsa.196850 I
cassava9008.m1 Manihot esculenta cassava9008.m1 I
cassava33974.m1 Manihot esculenta cassava33974.m1 I
cassava19706.m1 Manihot esculenta cassava19706.m1 I
30147.m013937 Ricinus communis 30147.m013937 I
29917.m001977 Ricinus communis 29917.m001977 I
Pm024743 Prunus mume Pm024743 I
Pm015681 Prunus mume Pm015681 I
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I
MDP0000215359 Malus domestica MDP0000215359 I
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I
Pavir.J02718 Panicum virgatum Pavir.J02718 I
Pavir.J02497 Panicum virgatum Pavir.J02497 I
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I
MDP0000319656 Malus domestica MDP0000319656 I
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I
MDP0000199939 Malus domestica MDP0000199939 I
Lus10039966.g Linum usitatissimum Lus10039966.g I
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I
GLYMA05G02300 Glycine max GLYMA05G02300 I
MYB118 Populus trichocarpa POPTR_0001s35140 I
Cla019490 Citrullus lanatus Cla019490 I
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I
MTR_7g037260 Medicago truncatula MTR_7g037260 I
MTR_4g088015 Medicago truncatula MTR_4g088015 I
MTR_3g077650 Medicago truncatula MTR_3g077650 I
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I
GLYMA19G13923 Glycine max GLYMA19G13923 I
GLYMA16G07927 Glycine max GLYMA16G07927 I
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I
Bra033027 Brassica rapa Bra033027 I
Bra025299 Brassica rapa Bra025299 I
Bra020992 Brassica rapa Bra020992 I
Bra013346 Brassica rapa Bra013346 I
Bo3g157300 Brassica oleracea Bo3g157300 I
Bo2g144970 Brassica oleracea Bo2g144970 I
Bo1g019910 Brassica oleracea Bo1g019910 I
TCM_012087 Theobroma cacao TCM_012087 I
Cla010586 Citrullus lanatus Cla010586 I
Ca_19427 Cicer arietinum Ca_19427 I
Ca_17294 Cicer arietinum Ca_17294 I
Ca_17087 Cicer arietinum Ca_17087 I
MYB98 Vitis vinifera VIT_17s0000g08550 I
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I
TCM_016909 Theobroma cacao TCM_016909 I
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I
MYB98 Arabidopsis lyrata scaffold_702543.1 I
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I
GSMUA_Achr3G09050_001 Musa acuminata GSMUA_Achr3G09050_001 N
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N
GLYMA05G08761 Glycine max GLYMA05G08761 N
cassava26674.m1 Manihot esculenta cassava26674.m1 N
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N
cassava26507.m1 Manihot esculenta cassava26507.m1 N
29681.m001315 Ricinus communis 29681.m001315 N
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N