nLs.2.1.2.g07200 (Litomosoides sigmodontis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 nLs.2.1.2.g07200 T336711_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t07200-RA Sox 45 111

Links

Other Sox family TFs
Other Litomosoides sigmodontis TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.000
MYB39 Arabidopsis thaliana AT4G17785 D 0.000
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.000
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.000
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.000
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.000
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.000
BGIOSGA016822 Oryza indica BGIOSGA016822 I 0.000
Bo1g024170 Brassica oleracea Bo1g024170 I 0.000
Bo1g051220 Brassica oleracea Bo1g051220 I 0.000
Bo3g162580 Brassica oleracea Bo3g162580 I 0.000
Bo6g077600 Brassica oleracea Bo6g077600 I 0.000
Bo7g107420 Brassica oleracea Bo7g107420 I 0.000
Bo7g111870 Brassica oleracea Bo7g111870 I 0.000
Bo9g076410 Brassica oleracea Bo9g076410 I 0.000
Bra013526 Brassica rapa Bra013526 I 0.000
Bra020892 Brassica rapa Bra020892 I 0.000
Bra024224 Brassica rapa Bra024224 I 0.000
Bra026281 Brassica rapa Bra026281 I 0.000
Bra029553 Brassica rapa Bra029553 I 0.000
Bra038774 Brassica rapa Bra038774 I 0.000
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.000
BRADI1G51747 Brachypodium distachyon BRADI1G51747 I 0.000
BRADI4G06317 Brachypodium distachyon BRADI4G06317 I 0.000
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.000
F775_02918 Aegilops tauschii F775_02918 I 0.000
F775_06561 Aegilops tauschii F775_06561 I 0.000
F775_14942 Aegilops tauschii F775_14942 I 0.000
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.000
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.000
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I 0.000
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.000
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.000
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.000
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.000
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.000
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.000
GLYMA12G34650 Glycine max GLYMA12G34650 I 0.000
GLYMA12G36630 Glycine max GLYMA12G36630 I 0.000
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.000
GLYMA13G35810 Glycine max GLYMA13G35810 I 0.000
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.000
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.000
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.000
GRMZM2G052606 Zea mays GRMZM2G052606 I 0.000
GRMZM2G097636 Zea mays GRMZM2G097636 I 0.000
GRMZM2G097638 Zea mays GRMZM2G097638 I 0.000
GRMZM2G102790 Zea mays GRMZM2G102790 I 0.000
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.000
GRMZM5G833253 Zea mays GRMZM5G833253 I 0.000
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I 0.000
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I 0.000
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I 0.000
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.000
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I 0.000
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.000
GSMUA_Achr5G18080_001 Musa acuminata GSMUA_Achr5G18080_001 I 0.000
GSMUA_Achr6G04130_001 Musa acuminata GSMUA_Achr6G04130_001 I 0.000
GSMUA_Achr6G29310_001 Musa acuminata GSMUA_Achr6G29310_001 I 0.000
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.000
GSMUA_Achr9G24560_001 Musa acuminata GSMUA_Achr9G24560_001 I 0.000
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I 0.000
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.000
MLOC_62436 Hordeum vulgare MLOC_62436 I 0.000
MLOC_66577 Hordeum vulgare MLOC_66577 I 0.000
MLOC_68698 Hordeum vulgare MLOC_68698 I 0.000
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.000
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.000
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.000
OB04G26860 Oryza brachyantha OB04G26860 I 0.000
OB04G30570 Oryza brachyantha OB04G30570 I 0.000
OBART04G23680 Oryza barthii OBART04G23680 I 0.000
OBART07G18450 Oryza barthii OBART07G18450 I 0.000
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.000
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.000
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.000
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.000
ONIVA04G17990 Oryza nivara ONIVA04G17990 I 0.000
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.000
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.000
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.000
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.000
ORGLA04G0169000 Oryza glaberrima ORGLA04G0169000 I 0.000
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.000
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.000
ORUFI04G21320 Oryza rufipogon ORUFI04G21320 I 0.000
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.000
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.000
OS04G0594100 Oryza sativa OS04G0594100 I 0.000
OS07G0558100 Oryza sativa OS07G0558100 I 0.000
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.000
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.000
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.000
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.000
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I 0.000
POPTR_0002s09720 Populus trichocarpa POPTR_0002s09720 I 0.000
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.000
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.000
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.000
POPTR_0011s12750 Populus trichocarpa POPTR_0011s12750 I 0.000
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.000
POPTR_0019s05190 Populus trichocarpa POPTR_0019s05190 I 0.000
POPTR_0019s05200 Populus trichocarpa POPTR_0019s05200 I 0.000
POPTR_0019s06290 Populus trichocarpa POPTR_0019s06290 I 0.000
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.000
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.000
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.000
PRUPE_ppa021577mg Prunus persica PRUPE_ppa021577mg I 0.000
PRUPE_ppa021921mg Prunus persica PRUPE_ppa021921mg I 0.000
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I 0.000
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.000
Sb06g023620 Sorghum bicolor Sb06g023620 I 0.000
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.000
Sb08g016620 Sorghum bicolor Sb08g016620 I 0.000
Si006790m.g Setaria italica Si006790m.g I 0.000
Si010384m.g Setaria italica Si010384m.g I 0.000
Si030273m.g Setaria italica Si030273m.g I 0.000
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.000
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.000
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.000
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.000
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.000
TCM_001102 Theobroma cacao TCM_001102 I 0.000
TCM_005885 Theobroma cacao TCM_005885 I 0.000
TCM_007904 Theobroma cacao TCM_007904 I 0.000
TCM_011658 Theobroma cacao TCM_011658 I 0.000
TCM_030009 Theobroma cacao TCM_030009 I 0.000
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I 0.000
Traes_2AS_FA7059723 Triticum aestivum Traes_2AS_FA7059723 I 0.000
Traes_2BL_79F1B50DF Triticum aestivum Traes_2BL_79F1B50DF I 0.000
Traes_2DL_5A0300CE0 Triticum aestivum Traes_2DL_5A0300CE0 I 0.000
Traes_2DS_49959692B1 Triticum aestivum Traes_2DS_49959692B1 I 0.000
Traes_2DS_49959692B Triticum aestivum Traes_2DS_49959692B I 0.000
Traes_4AL_9BF07972C Triticum aestivum Traes_4AL_9BF07972C I 0.000
Traes_4DL_4EE7DFCCD Triticum aestivum Traes_4DL_4EE7DFCCD I 0.000
Traes_5BS_2CB91C54A Triticum aestivum Traes_5BS_2CB91C54A I 0.000
Traes_5DS_AACA2EBA3 Triticum aestivum Traes_5DS_AACA2EBA3 I 0.000
TRIUR3_33254 Triticum urartu TRIUR3_33254 I 0.000
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.000
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.000
MYB49 Vitis vinifera VIT_19s0014g03820 I 0.000
Ca_00232 Cicer arietinum Ca_00232 I 0.000
Ca_14119 Cicer arietinum Ca_14119 I 0.000
Ca_22021 Cicer arietinum Ca_22021 I 0.000
Cla001360 Citrullus lanatus Cla001360 I 0.000
Cla006077 Citrullus lanatus Cla006077 I 0.000
Cla007838 Citrullus lanatus Cla007838 I 0.000
Cla014359 Citrullus lanatus Cla014359 I 0.000
Cla019747 Citrullus lanatus Cla019747 I 0.000
Pm009892 Prunus mume Pm009892 I 0.000
Pm011657 Prunus mume Pm011657 I 0.000
Pm015303 Prunus mume Pm015303 I 0.000
Pm015309 Prunus mume Pm015309 I 0.000
Pm020596 Prunus mume Pm020596 I 0.000
29983.m003281 Ricinus communis 29983.m003281 I 0.000
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.000
cassava24925.valid.m1 Manihot esculenta cassava24925.valid.m1 I 0.000
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.000
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.000
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.000
cassava47180.m1 Manihot esculenta cassava47180.m1 I 0.000
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.000
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.000
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.000
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.000
e_gw1.106.133.1 Physcomitrella patens e_gw1.106.133.1 I 0.000
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.000
e_gw1.326.5.1 Physcomitrella patens e_gw1.326.5.1 I 0.000
estExt_gwp_gw1.C_20043 Physcomitrella patens estExt_gwp_gw1.C_20043 I 0.000
mgf018114m Mimulus guttatus mgf018114m I 0.000
mgf023669m Mimulus guttatus mgf023669m I 0.000
mgf025298m Mimulus guttatus mgf025298m I 0.000
mgf026502m Mimulus guttatus mgf026502m I 0.000
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I 0.000
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.000
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.000
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.000
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.000
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.000
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.000
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.000
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.000
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I 0.000
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.000
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.000
Carubv10006864m.g Capsella rubella Carubv10006864m.g I 0.000
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.000
Ciclev10009050m.g Citrus clementina Ciclev10009050m.g I 0.000
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.000
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.000
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.000
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.000
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.000
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.000
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.000
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.000
evm.TU.supercontig_34.69 Carica papaya evm.TU.supercontig_34.69 I 0.000
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.000
evm.TU.supercontig_6.280 Carica papaya evm.TU.supercontig_6.280 I 0.000
gene01992-v1.0-hybrid Fragaria vesca gene01992-v1.0-hybrid I 0.000
gene08084-v1.0-hybrid Fragaria vesca gene08084-v1.0-hybrid I 0.000
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.000
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I 0.000
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I 0.000
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.000
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.000
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.000
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.000
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.000
Gorai.012G132200 Gossypium raimondii Gorai.012G132200 I 0.000
Gorai.013G088400 Gossypium raimondii Gorai.013G088400 I 0.000
Lus10002593.g Linum usitatissimum Lus10002593.g I 0.000
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.000
Lus10018418.g Linum usitatissimum Lus10018418.g I 0.000
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.000
Lus10039743.g Linum usitatissimum Lus10039743.g I 0.000
MDP0000145050 Malus domestica MDP0000145050 I 0.000
MDP0000468201 Malus domestica MDP0000468201 I 0.000
MDP0000492221 Malus domestica MDP0000492221 I 0.000
MDP0000710259 Malus domestica MDP0000710259 I 0.000
MDP0000897594 Malus domestica MDP0000897594 I 0.000
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.000
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.000
orange1.1g045387m.g Citrus sinensis orange1.1g045387m.g I 0.000
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.000
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I 0.000
Pavir.Ga00752 Panicum virgatum Pavir.Ga00752 I 0.000
Pavir.Ga01101 Panicum virgatum Pavir.Ga01101 I 0.000
Pavir.Gb00587 Panicum virgatum Pavir.Gb00587 I 0.000
Pavir.Gb00736 Panicum virgatum Pavir.Gb00736 I 0.000
Pavir.J23197 Panicum virgatum Pavir.J23197 I 0.000
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.000
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.000
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.000
SapurV1A.0417s0210 Salix purpurea SapurV1A.0417s0210 I 0.000
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I 0.000
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I 0.000
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.000
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.000
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.000
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.000
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.000
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.000