Pavir.Ga01101 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ga01101 T289213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.666 0.753
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.663 0.731
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.663 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01101.1.p Myb 90 137
Pavir.Ga01101.1.p Myb 143 188

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Gb00736 Panicum virgatum Pavir.Gb00736 I 0.909
MLOC_68698 Hordeum vulgare MLOC_68698 I 0.858
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I 0.858
Traes_2BL_79F1B50DF Triticum aestivum Traes_2BL_79F1B50DF I 0.858
Traes_2DL_5A0300CE0 Triticum aestivum Traes_2DL_5A0300CE0 I 0.858
BRADI5G16707 Brachypodium distachyon BRADI5G16707 I 0.825
Sb06g023620 Sorghum bicolor Sb06g023620 I 0.816
BGIOSGA016822 Oryza indica BGIOSGA016822 I 0.803
OB04G26860 Oryza brachyantha OB04G26860 I 0.803
ONIVA04G17990 Oryza nivara ONIVA04G17990 I 0.803
ORGLA04G0169000 Oryza glaberrima ORGLA04G0169000 I 0.803
ORUFI04G21320 Oryza rufipogon ORUFI04G21320 I 0.803
GRMZM2G123202 Zea mays GRMZM2G123202 N 0.760
BGIOSGA008700 Oryza indica BGIOSGA008700 I 0.755
OB02G32960 Oryza brachyantha OB02G32960 I 0.755
ORUFI02G27000 Oryza rufipogon ORUFI02G27000 I 0.755
OS02G0641900 Oryza sativa OS02G0641900 I 0.755
Si017934m.g Setaria italica Si017934m.g I 0.755
Pavir.Ab02419 Panicum virgatum Pavir.Ab02419 I 0.755
MLOC_39554 Hordeum vulgare MLOC_39554 I 0.752
Pavir.Aa01232 Panicum virgatum Pavir.Aa01232 I 0.752
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.737
F775_27854 Aegilops tauschii F775_27854 I 0.732
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.732
Traes_6DL_41CBE9959 Triticum aestivum Traes_6DL_41CBE9959 I 0.732
GRMZM2G040924 Zea mays GRMZM2G040924 I 0.725
GRMZM2G111045 Zea mays GRMZM2G111045 I 0.725
Sb04g033670 Sorghum bicolor Sb04g033670 I 0.725
BRADI3G49987 Brachypodium distachyon BRADI3G49987 I 0.719
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.712
Lus10039743.g Linum usitatissimum Lus10039743.g I 0.712
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.707
TCM_007904 Theobroma cacao TCM_007904 I 0.707
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.707
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.707
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.707
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.707
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.707
GSMUA_Achr5G12230_001 Musa acuminata GSMUA_Achr5G12230_001 I 0.706
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.703
Ca_14119 Cicer arietinum Ca_14119 I 0.702
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.702
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.700
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.699
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.698
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.696
GSMUA_Achr11G04090_001 Musa acuminata GSMUA_Achr11G04090_001 I 0.693
MDP0000468201 Malus domestica MDP0000468201 I 0.693
MDP0000710259 Malus domestica MDP0000710259 I 0.693
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.685
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.685
Bo6g077600 Brassica oleracea Bo6g077600 I 0.680
Cla007838 Citrullus lanatus Cla007838 I 0.680
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.680
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.677
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.677
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.677
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.677
29983.m003281 Ricinus communis 29983.m003281 I 0.677
mgf023669m Mimulus guttatus mgf023669m I 0.677
mgf025298m Mimulus guttatus mgf025298m I 0.677
mgf026502m Mimulus guttatus mgf026502m I 0.677
Bo1g051220 Brassica oleracea Bo1g051220 I 0.676
Bra026281 Brassica rapa Bra026281 I 0.676
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.676
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.676
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.676
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.673
Pm015309 Prunus mume Pm015309 I 0.673
BRADI1G51747 Brachypodium distachyon BRADI1G51747 I 0.672
Si006790m.g Setaria italica Si006790m.g I 0.672
Cla014359 Citrullus lanatus Cla014359 I 0.672
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.672
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.672
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.672
Pavir.J23197 Panicum virgatum Pavir.J23197 I 0.672
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.670
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.666
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.666
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.666
OB07G24240 Oryza brachyantha OB07G24240 I 0.666
OBART07G18450 Oryza barthii OBART07G18450 I 0.666
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.666
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.666
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.666
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.666
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.666
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.666
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.666
Si030273m.g Setaria italica Si030273m.g I 0.666
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.666
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.666
evm.TU.supercontig_18.232 Carica papaya evm.TU.supercontig_18.232 I 0.666
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.666
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.666
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.666
Pavir.Da02398 Panicum virgatum Pavir.Da02398 I 0.665
BRADI3G38807 Brachypodium distachyon BRADI3G38807 I 0.664
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.663
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.663
Bo9g076410 Brassica oleracea Bo9g076410 I 0.663
Bra029553 Brassica rapa Bra029553 I 0.663
OS07G0558100 Oryza sativa OS07G0558100 I 0.663
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.663
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.663
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.663
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.663
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.663
TCM_030009 Theobroma cacao TCM_030009 I 0.663
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.663
Cla001360 Citrullus lanatus Cla001360 I 0.663
Pm009892 Prunus mume Pm009892 I 0.663
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.663
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.663
mgf018114m Mimulus guttatus mgf018114m I 0.663
Aquca_013_00356 Aquilegia coerulea Aquca_013_00356 I 0.663
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.663
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.663
MDP0000492221 Malus domestica MDP0000492221 I 0.663
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.663
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.663
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.663
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.663
SapurV1A.0024s0060 Salix purpurea SapurV1A.0024s0060 I 0.662
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.661
Ciclev10003958m.g Citrus clementina Ciclev10003958m.g I 0.661
Gorai.003G039500 Gossypium raimondii Gorai.003G039500 I 0.661
orange1.1g037998m.g Citrus sinensis orange1.1g037998m.g I 0.661