T (Mus musculus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSMUSG00000062327 T340152_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
T
M09431_2.00		 Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B		 (Direct) (Direct)
T
M09651_2.00		 Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.498 1.000
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.498 1.000
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.498 1.000
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.920 0.994
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.920 0.994
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.498 1.000
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.876 0.835
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.876 0.835
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.876 0.835
byn
M03984_2.00 		Drosophila melanogaster
ABGTGYGADDD
HHHTCRCACVT		 SELEX
Nitta et al.(2015)
byn_1 		0.810 0.744
byn
M03985_2.00 		Drosophila melanogaster
DNGTGYBAHWWDTVRCACNH
DNGTGYBAHWWDTVRCACNH		 SELEX
Nitta et al.(2015)
byn_2 		0.810 0.744
byn
M03986_2.00 		Drosophila melanogaster
RDGTGYGADNDNDNNNNNNDRDGTGYGADD
HHTCRCACHYHNNNNNNHNHNHTCRCACHY		 SELEX
Nitta et al.(2015)
byn_3 		0.810 0.744
byn
M03987_2.00 		Drosophila melanogaster
NNTMRCAYNWWNRTGYKAHN
NDTMRCAYNWWNRTGYKANN		 SELEX
Nitta et al.(2015)
byn_4 		0.810 0.744
byn
M06453_2.00 		Drosophila melanogaster
ADGTGCDA
THGCACHT		 B1H
Zhu et al.(2011)
byn_FlyReg_FBgn0011723 		0.810 0.744
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000074236 T-box 44 219
ENSMUSP00000119581 T-box 1 137
ENSMUSP00000135526 T-box 1 77

Links

Other T-box family TFs
Other Mus musculus TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I
Carubv10005335m.g Capsella rubella Carubv10005335m.g I
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I
Ca_23174 Cicer arietinum Ca_23174 I
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I
MTR_1g043430 Medicago truncatula MTR_1g043430 I
GLYMA20G22010 Glycine max GLYMA20G22010 I
GLYMA10G01010 Glycine max GLYMA10G01010 I
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I
Bra041033 Brassica rapa Bra041033 I
29603.m000513 Ricinus communis 29603.m000513 N
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N
Lus10021199.g Linum usitatissimum Lus10021199.g N
Lus10021876.g Linum usitatissimum Lus10021876.g N
Lus10041148.g Linum usitatissimum Lus10041148.g N
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N