ORUFI01G34460 (Oryza rufipogon)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 ORUFI01G34460 T344200_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.918 0.464
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.889 0.450
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.885 0.443
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.874 0.393
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.874 0.393
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.874 0.393
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.871 0.386
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.871 0.386
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.852 0.350
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.852 0.350
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.830 0.329
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.830 0.329
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.830 0.329
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.829 0.307
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI01G34460.1 TCP 138 343

Links

Other TCP family TFs
Other Oryza rufipogon TFs

340 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIL2 Arabidopsis thaliana AT3G14180 D 0.000
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.000
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.000
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.000
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.000
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.000
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.000
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.000
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.000
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.000
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.000
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.000
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.000
mgf006505m Mimulus guttatus mgf006505m I 0.000
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.000
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.000
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.000
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.000
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.000
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.000
MDP0000255104 Malus domestica MDP0000255104 I 0.000
MDP0000281471 Malus domestica MDP0000281471 I 0.000
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.000
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.000
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.000
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.000
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.000
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.000
Bo1g134590 Brassica oleracea Bo1g134590 I 0.000
Bra014370 Brassica rapa Bra014370 I 0.000
Bra037960 Brassica rapa Bra037960 I 0.000
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.000
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.000
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.000
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.000
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.000
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.000
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.000
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.000
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.000
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.000
29814.m000741 Ricinus communis 29814.m000741 I 0.000
29727.m000472 Ricinus communis 29727.m000472 I 0.000
Pm013209 Prunus mume Pm013209 I 0.000
Cla015773 Citrullus lanatus Cla015773 I 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.000
TCM_029209 Theobroma cacao TCM_029209 I 0.000
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.000
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.000
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.000
MDP0000097759 Malus domestica MDP0000097759 N 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.000
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.000
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.000
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.000
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.000
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.000
PK22475.1 Cannabis sativa PK22475.1 N 0.000
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.000