cassava20535.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava20535.m1 T344601_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.881 0.532
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.876 0.443
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.875 0.506
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.873 0.506
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.873 0.506
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.867 0.532
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.866 0.582
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.860 0.532
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.860 0.532
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.860 0.532
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.854 0.392
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.854 0.392
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.854 0.392
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.854 0.392
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.854 0.392
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.849 0.430
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.846 0.443
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.838 0.418
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.836 0.443
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.836 0.430
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.836 0.430
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.836 0.430
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.836 0.430
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.836 0.418
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava20535.m1 TCP 60 147

Links

Other TCP family TFs
Other Manihot esculenta TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00003p00266720 Amborella trichopoda AMTR_s00003p00266720 N
VAL1 Arabidopsis thaliana AT2G30470 N
VAL2 Arabidopsis thaliana AT4G32010 N
BGIOSGA023709 Oryza indica BGIOSGA023709 N
BGIOSGA025947 Oryza indica BGIOSGA025947 N
Bo1g024250 Brassica oleracea Bo1g024250 N
Bo3g024640 Brassica oleracea Bo3g024640 N
Bo4g058460 Brassica oleracea Bo4g058460 N
Bo4g173060 Brassica oleracea Bo4g173060 N
Bo7g115560 Brassica oleracea Bo7g115560 N
Bo7g115570 Brassica oleracea Bo7g115570 N
Bra013535 Brassica rapa Bra013535 N
Bra018313 Brassica rapa Bra018313 N
Bra021635 Brassica rapa Bra021635 N
Bra022801 Brassica rapa Bra022801 N
Bra023968 Brassica rapa Bra023968 N
BRADI1G17680 Brachypodium distachyon BRADI1G17680 N
BRADI1G24720 Brachypodium distachyon BRADI1G24720 N
F775_30051 Aegilops tauschii F775_30051 N
F775_32613 Aegilops tauschii F775_32613 N
GLYMA01G32810 Glycine max GLYMA01G32810 N
GLYMA02G40280 Glycine max GLYMA02G40280 N
GLYMA03G04330 Glycine max GLYMA03G04330 N
GLYMA11G31234 Glycine max GLYMA11G31234 N
GLYMA13G31970 Glycine max GLYMA13G31970 N
GLYMA14G38492 Glycine max GLYMA14G38492 N
GLYMA15G07350 Glycine max GLYMA15G07350 N
GLYMA18G05840 Glycine max GLYMA18G05840 N
GRMZM2G008356 Zea mays GRMZM2G008356 N
GRMZM2G158162 Zea mays GRMZM2G158162 N
GRMZM2G172621 Zea mays GRMZM2G172621 N
GSMUA_Achr4G23790_001 Musa acuminata GSMUA_Achr4G23790_001 N
GSMUA_Achr5G27930_001 Musa acuminata GSMUA_Achr5G27930_001 N
GSMUA_Achr7G00120_001 Musa acuminata GSMUA_Achr7G00120_001 N
GSMUA_Achr8G01750_001 Musa acuminata GSMUA_Achr8G01750_001 N
GSMUA_Achr8G03800_001 Musa acuminata GSMUA_Achr8G03800_001 N
LPERR07G16110 Leersia perrieri LPERR07G16110 N
LPERR07G23240 Leersia perrieri LPERR07G23240 N
MLOC_36861 Hordeum vulgare MLOC_36861 N
MLOC_4657 Hordeum vulgare MLOC_4657 N
MTR_2g011940 Medicago truncatula MTR_2g011940 N
MTR_3g467380 Medicago truncatula MTR_3g467380 N
MTR_4g028130 Medicago truncatula MTR_4g028130 N
MTR_5g075410 Medicago truncatula MTR_5g075410 N
OB07G31850 Oryza brachyantha OB07G31850 N
OBART07G18780 Oryza barthii OBART07G18780 N
OBART07G26400 Oryza barthii OBART07G26400 N
OGLUM07G18530 Oryza glumaepatula OGLUM07G18530 N
OGLUM07G26430 Oryza glumaepatula OGLUM07G26430 N
OLONG_008212 Oryza longistaminata OLONG_008212 N
OLONG_013183 Oryza longistaminata OLONG_013183 N
OMERI07G15550 Oryza meridionalis OMERI07G15550 N
OMERI07G23020 Oryza meridionalis OMERI07G23020 N
ONIVA07G17160 Oryza nivara ONIVA07G17160 N
ONIVA07G26110 Oryza nivara ONIVA07G26110 N
OPUNC07G17640 Oryza punctata OPUNC07G17640 N
OPUNC07G24850 Oryza punctata OPUNC07G24850 N
ORGLA07G0151800 Oryza glaberrima ORGLA07G0151800 N
ORGLA07G0207500 Oryza glaberrima ORGLA07G0207500 N
ORUFI07G19520 Oryza rufipogon ORUFI07G19520 N
ORUFI07G27410 Oryza rufipogon ORUFI07G27410 N
OS07G0679700 Oryza sativa OS07G0679700 N
POPTR_0004s03530 Populus trichocarpa POPTR_0004s03530 N
POPTR_0006s10880 Populus trichocarpa POPTR_0006s10880 N
POPTR_0011s04340 Populus trichocarpa POPTR_0011s04340 N
POPTR_0013s15330 Populus trichocarpa POPTR_0013s15330 N
POPTR_0016s14350 Populus trichocarpa POPTR_0016s14350 N
POPTR_0019s15070 Populus trichocarpa POPTR_0019s15070 N
PRUPE_ppa001220mg Prunus persica PRUPE_ppa001220mg N
PRUPE_ppa001229mg Prunus persica PRUPE_ppa001229mg N
PRUPE_ppa001234mg Prunus persica PRUPE_ppa001234mg N
Sb02g036430 Sorghum bicolor Sb02g036430 N
Sb02g043000 Sorghum bicolor Sb02g043000 N
HSI2 Arabidopsis lyrata scaffold_401535.1 N
HSL1 Arabidopsis lyrata scaffold_700997.1 N
SELMODRAFT_451626 Selaginella moellendorffii SELMODRAFT_451626 N
SELMODRAFT_451631 Selaginella moellendorffii SELMODRAFT_451631 N
SELMODRAFT_451634 Selaginella moellendorffii SELMODRAFT_451634 N
SELMODRAFT_451635 Selaginella moellendorffii SELMODRAFT_451635 N
Si028829m.g Setaria italica Si028829m.g N
Si028834m.g Setaria italica Si028834m.g N
Solyc02g079020.2 Solanum lycopersicum Solyc02g079020.2 N
Solyc06g082520.2 Solanum lycopersicum Solyc06g082520.2 N
Solyc10g075030.1 Solanum lycopersicum Solyc10g075030.1 N
TCM_019701 Theobroma cacao TCM_019701 N
TCM_029976 Theobroma cacao TCM_029976 N
TCM_042290 Theobroma cacao TCM_042290 N
Traes_2AS_C4FD8E351 Triticum aestivum Traes_2AS_C4FD8E351 N
Traes_2AS_F4CEC9849 Triticum aestivum Traes_2AS_F4CEC9849 N
Traes_2BS_5B00A8C50 Triticum aestivum Traes_2BS_5B00A8C50 N
Traes_2BS_A61094919 Triticum aestivum Traes_2BS_A61094919 N
Traes_2DS_3E4E3BEFC Triticum aestivum Traes_2DS_3E4E3BEFC N
Traes_2DS_B1C947D2B Triticum aestivum Traes_2DS_B1C947D2B N
TRIUR3_04238 Triticum urartu TRIUR3_04238 N
VAL3 Vitis vinifera VIT_00s0181g00260 N
VIT_06s0004g08100 Vitis vinifera VIT_06s0004g08100 N
HSL1 Vitis vinifera VIT_08s0058g01300 N
Ca_00244 Cicer arietinum Ca_00244 N
Ca_08924 Cicer arietinum Ca_08924 N
Ca_15659 Cicer arietinum Ca_15659 N
Ca_23185 Cicer arietinum Ca_23185 N
Cla008225 Citrullus lanatus Cla008225 N
Cla018330 Citrullus lanatus Cla018330 N
Pm000247 Prunus mume Pm000247 N
Pm003031 Prunus mume Pm003031 N
Pm009906 Prunus mume Pm009906 N
29915.m000469 Ricinus communis 29915.m000469 N
29917.m001969 Ricinus communis 29917.m001969 N
29976.m000497 Ricinus communis 29976.m000497 N
cassava13133.valid.m1 Manihot esculenta cassava13133.valid.m1 N
cassava25238.valid.m1 Manihot esculenta cassava25238.valid.m1 N
cassava39646.m1 Manihot esculenta cassava39646.m1 N
cassava41301.m1 Manihot esculenta cassava41301.m1 N
Cucsa.045980 Cucumis sativus Cucsa.045980 N
Cucsa.111990 Cucumis sativus Cucsa.111990 N
Cucsa.177010 Cucumis sativus Cucsa.177010 N
mgf007363m Mimulus guttatus mgf007363m N
mgf007846m Mimulus guttatus mgf007846m N
mgf013365m Mimulus guttatus mgf013365m N
mgf024907m Mimulus guttatus mgf024907m N
Aquca_008_00005 Aquilegia coerulea Aquca_008_00005 N
Aquca_045_00208 Aquilegia coerulea Aquca_045_00208 N
Aquca_063_00016 Aquilegia coerulea Aquca_063_00016 N
Bostr.10689s0100 Boechera stricta Bostr.10689s0100 N
Bostr.24513s0191 Boechera stricta Bostr.24513s0191 N
Bostr.7867s1055 Boechera stricta Bostr.7867s1055 N
Cagra.0567s0011 Capsella grandiflora Cagra.0567s0011 N
Cagra.12385s0007 Capsella grandiflora Cagra.12385s0007 N
Cagra.3519s0007 Capsella grandiflora Cagra.3519s0007 N
Carubv10004192m.g Capsella rubella Carubv10004192m.g N
Carubv10004194m.g Capsella rubella Carubv10004194m.g N
Carubv10022654m.g Capsella rubella Carubv10022654m.g N
Ciclev10000225m.g Citrus clementina Ciclev10000225m.g N
Ciclev10011039m.g Citrus clementina Ciclev10011039m.g N
Ciclev10014219m.g Citrus clementina Ciclev10014219m.g N
Eucgr.B04027 Eucalyptus grandis Eucgr.B04027 N
Eucgr.E03465 Eucalyptus grandis Eucgr.E03465 N
Eucgr.E03467 Eucalyptus grandis Eucgr.E03467 N
Eucgr.F02704 Eucalyptus grandis Eucgr.F02704 N
Eucgr.L01473 Eucalyptus grandis Eucgr.L01473 N
evm.TU.supercontig_2.296 Carica papaya evm.TU.supercontig_2.296 N
gene13877-v1.0-hybrid Fragaria vesca gene13877-v1.0-hybrid N
gene28098-v1.0-hybrid Fragaria vesca gene28098-v1.0-hybrid N
gene30690-v1.0-hybrid Fragaria vesca gene30690-v1.0-hybrid N
Gorai.003G152700 Gossypium raimondii Gorai.003G152700 N
Gorai.005G004300 Gossypium raimondii Gorai.005G004300 N
Gorai.009G173100 Gossypium raimondii Gorai.009G173100 N
Gorai.011G022400 Gossypium raimondii Gorai.011G022400 N
Gorai.011G127500 Gossypium raimondii Gorai.011G127500 N
Lus10018440.g Linum usitatissimum Lus10018440.g N
Lus10022741.g Linum usitatissimum Lus10022741.g N
Lus10025142.g Linum usitatissimum Lus10025142.g N
Lus10025226.g Linum usitatissimum Lus10025226.g N
MDP0000127640 Malus domestica MDP0000127640 N
MDP0000229344 Malus domestica MDP0000229344 N
MDP0000267885 Malus domestica MDP0000267885 N
MDP0000274788 Malus domestica MDP0000274788 N
orange1.1g002489m.g Citrus sinensis orange1.1g002489m.g N
orange1.1g002708m.g Citrus sinensis orange1.1g002708m.g N
orange1.1g039386m.g Citrus sinensis orange1.1g039386m.g N
Pavir.Ba00225 Panicum virgatum Pavir.Ba00225 N
Pavir.Ba00654 Panicum virgatum Pavir.Ba00654 N
Pavir.Bb03074 Panicum virgatum Pavir.Bb03074 N
Pavir.Bb03754 Panicum virgatum Pavir.Bb03754 N
SapurV1A.0028s0060 Salix purpurea SapurV1A.0028s0060 N
SapurV1A.0044s0150 Salix purpurea SapurV1A.0044s0150 N
SapurV1A.0065s0470 Salix purpurea SapurV1A.0065s0470 N
SapurV1A.0215s0260 Salix purpurea SapurV1A.0215s0260 N
SapurV1A.0914s0080 Salix purpurea SapurV1A.0914s0080 N
SapurV1A.1353s0040 Salix purpurea SapurV1A.1353s0040 N
Thhalv10016263m.g Eutrema salsugineum Thhalv10016263m.g N
Thhalv10024481m.g Eutrema salsugineum Thhalv10024481m.g N
Thhalv10024526m.g Eutrema salsugineum Thhalv10024526m.g N
PK04158.1 Cannabis sativa PK04158.1 N
PK09020.1 Cannabis sativa PK09020.1 N
PK13763.1 Cannabis sativa PK13763.1 N
LjSGA_009543.1 Lotus japonicus LjSGA_009543.1 N
LjSGA_029833.1 Lotus japonicus LjSGA_029833.1 N
PDK_20s13009463g004 Phoenix dactylifera PDK_20s13009463g004 N
PDK_20s13009466g004 Phoenix dactylifera PDK_20s13009466g004 N
PDK_20s1314471g001 Phoenix dactylifera PDK_20s1314471g001 N
PDK_20s1455001g004 Phoenix dactylifera PDK_20s1455001g004 N