CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.25542s0130 *(Boechera stricta)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Bostr.25542s0130	T355822_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY12 M00898_2.00	Arabidopsis thaliana	NHGGTCAACNN	NNGTTGACCDN	PBM Franco-Zorrilla et al.(2014) WRKY12	0.855	0.810
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.829	0.724
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.828	0.724
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.828	0.724
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.828	0.707
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.828	0.707
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.828	0.707
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.825	0.724
WRKY24 M07426_2.00	Arabidopsis thaliana	NNNAWAGTCAACGN	NCGTTGACTWTNNN	Dap-seq OMalley et al.(2016) WRKY24_col_a	0.824	0.707
WRKY24 M07427_2.00	Arabidopsis thaliana	NAWAGTCAACGNH	DNCGTTGACTWTN	Dap-seq OMalley et al.(2016) WRKY24_colamp_a	0.824	0.707
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.824	0.724
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.821	0.690
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.821	0.690
WRKY75 M02562_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Weirauch et al.(2014) pTH8821	0.818	0.672
WRKY75 M07420_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY75_col_a	0.818	0.672
WRKY75 M07421_2.00	Arabidopsis thaliana	VAAAGTCAACRNH	DNYGTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY75_colamp_a	0.818	0.672
WRKY43 M02555_2.00	Arabidopsis thaliana	NRGTCAAHNN	NNDTTGACYN	PBM Weirauch et al.(2014) pTH7373	0.818	0.672
WRKY43 M07393_2.00	Arabidopsis thaliana	NNAAAGTCAACGNN	NNCGTTGACTTTNN	Dap-seq OMalley et al.(2016) WRKY43_col_a	0.818	0.672
WRKY43 M07394_2.00	Arabidopsis thaliana	NNNNAAAGTCAACGN	NCGTTGACTTTNNNN	Dap-seq OMalley et al.(2016) WRKY43_colamp_a	0.818	0.672
WRKY50 M07424_2.00	Arabidopsis thaliana	NNAAAAGTCAAMN	NKTTGACTTTTNN	Dap-seq OMalley et al.(2016) WRKY50_col_a	0.818	0.690
WRKY50 M07425_2.00	Arabidopsis thaliana	NWAAGTCAANN	NNTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY50_colamp_a	0.818	0.690
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.818	0.621
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.816	0.552
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.815	0.552
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.815	0.552
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.815	0.552
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.813	0.569
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.813	0.569
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.813	0.569
WRKY45 M00899_2.00	Arabidopsis thaliana	NNRGTCAAMGN	NCKTTGACYNN	PBM Franco-Zorrilla et al.(2014) WRKY45	0.809	0.638
WRKY45 M07397_2.00	Arabidopsis thaliana	NAAAAGTCAAMD	HKTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY45_col_a	0.809	0.638
WRKY45 M07398_2.00	Arabidopsis thaliana	MAAAGTCAAMV	BKTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY45_colamp_a	0.809	0.638
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.809	0.534
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.809	0.534
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.809	0.534
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.25542s0130.1.p	WRKY	221	278	DDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS

Links
Other WRKY family TFs
Other *Boechera stricta* TFs

1233 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Pm011344	Prunus mume	Pm011344	N
PK03811.1	Cannabis sativa	PK03811.1	N
SapurV1A.0083s0320	Salix purpurea	SapurV1A.0083s0320	N
orange1.1g016887m.g	Citrus sinensis	orange1.1g016887m.g	N
Gorai.013G172000	Gossypium raimondii	Gorai.013G172000	N
Gorai.002G065900	Gossypium raimondii	Gorai.002G065900	N
evm.TU.supercontig_80.16	Carica papaya	evm.TU.supercontig_80.16	N
Carubv10014092m.g	Capsella rubella	Carubv10014092m.g	N
Cagra.1681s0007	Capsella grandiflora	Cagra.1681s0007	N
Bostr.19424s0824	Boechera stricta	Bostr.19424s0824	N
mgf014854m	Mimulus guttatus	mgf014854m	N
Cucsa.032420	Cucumis sativus	Cucsa.032420	N
30209.m001510	Ricinus communis	30209.m001510	N
AT3G18380	Arabidopsis thaliana	AT3G18380	N
Ogr09559	Ophisaurus gracilis	Ogr09559	N
TRIUR3_26093	Triticum urartu	TRIUR3_26093	N
POPTR_0174s00240	Populus trichocarpa	POPTR_0174s00240	N
POPTR_0011s09970	Populus trichocarpa	POPTR_0011s09970	N
GSMUA_Achr4G18450_001	Musa acuminata	GSMUA_Achr4G18450_001	N
GRMZM2G111204	Zea mays	GRMZM2G111204	N
GLYMA12G18490	Glycine max	GLYMA12G18490	N
CBG05223	Caenorhabditis briggsae	CBG05223	N
Bra037587	Brassica rapa	Bra037587	N
Bra022316	Brassica rapa	Bra022316	N
Bo5g118650	Brassica oleracea	Bo5g118650	N
Bo1g117640	Brassica oleracea	Bo1g117640	N

Bostr.25542s0130 (Boechera stricta) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1233 Related TFs

Bostr.25542s0130 **(Boechera stricta)
WRKY**