cassava44357.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava44357.m1 T006945_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.786 0.980
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.772 0.940
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.753 0.940
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava44357.m1 AP2 27 78

Links

Other AP2 family TFs
Other Manihot esculenta TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006165 Ricinus communis 29908.m006165 I 0.786
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.785
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.772
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.700
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.714
Bo5g034880 Brassica oleracea Bo5g034880 I 0.770
Bo6g004620 Brassica oleracea Bo6g004620 I 0.786
Bo6g121400 Brassica oleracea Bo6g121400 I 0.781
Bo7g059990 Brassica oleracea Bo7g059990 I 0.720
Bo8g071150 Brassica oleracea Bo8g071150 I 0.762
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.786
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.772
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.753
Bra012298 Brassica rapa Bra012298 I 0.753
Bra015660 Brassica rapa Bra015660 I 0.781
Bra016400 Brassica rapa Bra016400 I 0.762
Bra036022 Brassica rapa Bra036022 I 0.772
Bra040309 Brassica rapa Bra040309 I 0.786
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.764
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.706
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.772
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.741
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.786
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.772
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.772
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.786
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.741
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.786
Ca_25824 Cicer arietinum Ca_25824 I 0.786
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.748
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.779
Cla014165 Citrullus lanatus Cla014165 I 0.786
Cla023512 Citrullus lanatus Cla023512 I 0.783
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.786
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.783
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.772
ERF012 Arabidopsis thaliana AT1G21910 D 0.772
ERF013 Arabidopsis thaliana AT1G77640 D 0.753
ERF014 Arabidopsis thaliana AT1G44830 D 0.786
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.739
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.786
F775_17148 Aegilops tauschii F775_17148 I 0.772
F775_20580 Aegilops tauschii F775_20580 I 0.760
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.786
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.753
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.786
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.786
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.786
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.786
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.786
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.786
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.786
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.786
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.742
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.772
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.750
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.722
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.724
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.763
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.761
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.770
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.719
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.748
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.766
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.700
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.772
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.786
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.786
MDP0000120147 Malus domestica MDP0000120147 I 0.786
MDP0000319736 Malus domestica MDP0000319736 I 0.758
MDP0000923690 Malus domestica MDP0000923690 I 0.786
mgf021045m Mimulus guttatus mgf021045m I 0.786
mgf023290m Mimulus guttatus mgf023290m I 0.770
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.759
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.786
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.786
OB03G21640 Oryza brachyantha OB03G21640 I 0.688
OBART03G11470 Oryza barthii OBART03G11470 I 0.700
OBART06G07000 Oryza barthii OBART06G07000 I 0.714
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.772
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.700
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.714
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.772
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.700
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.714
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.772
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.700
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.714
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.772
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.700
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.714
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.779
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.700
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.714
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.700
OS02G0767800 Oryza sativa OS02G0767800 I 0.772
OS03G0263000 Oryza sativa OS03G0263000 I 0.700
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.750
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.750
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.772
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.763
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.763
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.713
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.779
PK16069.1 Cannabis sativa PK16069.1 I 0.750
Pm004870 Prunus mume Pm004870 I 0.786
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.786
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.772
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.786
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.786
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.773
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.773
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.750
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.772
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.757
Si007977m.g Setaria italica Si007977m.g I 0.763
Si039170m.g Setaria italica Si039170m.g I 0.750
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.779
TCM_035077 Theobroma cacao TCM_035077 I 0.786
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.772
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.786
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.781
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.706
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.706
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.706
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.783