arid5b (Takifugu rubripes)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSTRUG00000010671 T014806_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.738 0.884
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.738 0.884
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.738 0.884
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.738 0.884
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.657 0.756
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.657 0.756
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.630 0.640
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.506 0.605
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000026934 ARID/BRIGHT 323 409
ENSTRUP00000026935 ARID/BRIGHT 328 414
ENSTRUP00000026936 ARID/BRIGHT 79 165

Links

Other ARID/BRIGHT family TFs
Other Takifugu rubripes TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.000
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.000
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.000
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.000
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.000
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.000
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.000
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.000
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.000
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.000
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.000
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.000
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.000
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.000
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.000
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.000
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.000