BHLHE40 (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000011390 T037878_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 1.000
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 1.000
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 1.000
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 1.000
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 1.000
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 1.000
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 1.000
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 1.000
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 1.000
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 1.000
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 1.000
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 1.000
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 1.000
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 1.000
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 1.000
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 0.981
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 0.981
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 0.981
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 0.981
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 0.981
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 0.981
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000028751 bHLH 49 103
ENSTRUP00000028752 bHLH 49 103
ENSTRUP00000028753 bHLH 49 103

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m004071 Ricinus communis 30138.m004071 I
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
BGIOSGA022580 Oryza indica BGIOSGA022580 I
Bo7g064180 Brassica oleracea Bo7g064180 I
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I
Bra008153 Brassica rapa Bra008153 I
Bra012122 Brassica rapa Bra012122 I
Bra015907 Brassica rapa Bra015907 I
Bra037130 Brassica rapa Bra037130 N
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I
Carubv10011133m.g Capsella rubella Carubv10011133m.g I
Carubv10021541m.g Capsella rubella Carubv10021541m.g I
Carubv10027579m.g Capsella rubella Carubv10027579m.g N
cassava35166.m1 Manihot esculenta cassava35166.m1 I
Ca_13151 Cicer arietinum Ca_13151 I
Ca_27191 Cicer arietinum Ca_27191 I
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I
Cla019404 Citrullus lanatus Cla019404 I
Cucsa.197700 Cucumis sativus Cucsa.197700 I
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I
F775_07483 Aegilops tauschii F775_07483 I
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I
gene12898-v1.0-hybrid Fragaria vesca gene12898-v1.0-hybrid N
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I
GLYMA04G33516 Glycine max GLYMA04G33516 I
GLYMA05G01030 Glycine max GLYMA05G01030 I
GLYMA06G20881 Glycine max GLYMA06G20881 I
GLYMA17G10866 Glycine max GLYMA17G10866 I
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I
GRMZM2G392306 Zea mays GRMZM2G392306 I
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N
LPERR06G07570 Leersia perrieri LPERR06G07570 I
Lus10019100.g Linum usitatissimum Lus10019100.g I
Lus10034456.g Linum usitatissimum Lus10034456.g I
MDP0000261199 Malus domestica MDP0000261199 I
MDP0000266172 Malus domestica MDP0000266172 I
mg020279m Mimulus guttatus mg020279m I
mgf022310m Mimulus guttatus mgf022310m I
MLOC_12609 Hordeum vulgare MLOC_12609 I
MLOC_59560 Hordeum vulgare MLOC_59560 I
MTR_3g435550 Medicago truncatula MTR_3g435550 I
OB06G17750 Oryza brachyantha OB06G17750 I
OMERI06G09770 Oryza meridionalis OMERI06G09770 I
ONIVA06G09450 Oryza nivara ONIVA06G09450 I
OPUNC06G07940 Oryza punctata OPUNC06G07940 I
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I
OS06G0228950 Oryza sativa OS06G0228950 I
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I
Pavir.J13146 Panicum virgatum Pavir.J13146 I
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I
PGSC0003DMG400018531 Solanum tuberosum PGSC0003DMG400018531 N
Pm024905 Prunus mume Pm024905 I
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I
RKD1 Arabidopsis thaliana AT1G18790 I
RKD2 Arabidopsis thaliana AT1G74480 D
RKD3 Arabidopsis thaliana AT5G66990 N
Sb10g008120 Sorghum bicolor Sb10g008120 I
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N
Si008273m.g Setaria italica Si008273m.g I
Solyc03g083040.1 Solanum lycopersicum Solyc03g083040.1 N
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I
TCM_014009 Theobroma cacao TCM_014009 I
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I
TRIUR3_19503 Triticum urartu TRIUR3_19503 I
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I