ONIVA03G34090 (Oryza nivara)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ONIVA03G34090 T042628_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.912 0.780
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.884 0.600
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.860 0.580
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.860 0.580
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.860 0.580
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.860 0.560
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.860 0.560
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.849 0.560
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.840 0.600
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA03G34090.1 bHLH 175 224
ONIVA03G34090.2 bHLH 175 224

Links

Other bHLH family TFs
Other Oryza nivara TFs

566 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29686.m000890 Ricinus communis 29686.m000890 I
29785.m000932 Ricinus communis 29785.m000932 I
29823.m000215 Ricinus communis 29823.m000215 I
AC217264.3_FG005 Zea mays AC217264.3_FG005 I
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I
ATMYB120 Arabidopsis thaliana AT5G55020 I
ATMYB65 Arabidopsis thaliana AT3G11440 D
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I
AtMYB79 Arabidopsis thaliana AT4G13480 I
BGIOSGA017818 Oryza indica BGIOSGA017818 I
Bo1g141040 Brassica oleracea Bo1g141040 I
Bo3g021790 Brassica oleracea Bo3g021790 I
Bo3g026690 Brassica oleracea Bo3g026690 I
Bo4g046000 Brassica oleracea Bo4g046000 I
Bo4g076940 Brassica oleracea Bo4g076940 I
Bo4g178040 Brassica oleracea Bo4g178040 I
Bo5g136570 Brassica oleracea Bo5g136570 I
Bo7g033260 Brassica oleracea Bo7g033260 I
Bo9g119060 Brassica oleracea Bo9g119060 I
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I
Bra002042 Brassica rapa Bra002042 I
Bra002938 Brassica rapa Bra002938 I
Bra005597 Brassica rapa Bra005597 I
Bra012038 Brassica rapa Bra012038 I
Bra015029 Brassica rapa Bra015029 I
Bra021791 Brassica rapa Bra021791 I
Bra022888 Brassica rapa Bra022888 I
Bra028997 Brassica rapa Bra028997 I
Bra034842 Brassica rapa Bra034842 I
Bra035547 Brassica rapa Bra035547 I
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I
Carubv10000715m.g Capsella rubella Carubv10000715m.g I
Carubv10013393m.g Capsella rubella Carubv10013393m.g I
Carubv10025227m.g Capsella rubella Carubv10025227m.g I
Carubv10026070m.g Capsella rubella Carubv10026070m.g I
cassava11031.m1 Manihot esculenta cassava11031.m1 I
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I
cassava40302.m1 Manihot esculenta cassava40302.m1 I
cassava44767.m1 Manihot esculenta cassava44767.m1 I
Ca_07119 Cicer arietinum Ca_07119 I
Ca_15422 Cicer arietinum Ca_15422 I
Ca_20081 Cicer arietinum Ca_20081 I
Ca_21739 Cicer arietinum Ca_21739 I
Ca_25013 Cicer arietinum Ca_25013 I
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I
Cla005406 Citrullus lanatus Cla005406 I
Cla007782 Citrullus lanatus Cla007782 I
Cla013880 Citrullus lanatus Cla013880 I
Cucsa.060080 Cucumis sativus Cucsa.060080 I
Cucsa.148580 Cucumis sativus Cucsa.148580 I
Cucsa.364400 Cucumis sativus Cucsa.364400 I
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I
Eucgr.K03562 Eucalyptus grandis Eucgr.K03562 I
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I
F775_00954 Aegilops tauschii F775_00954 I
F775_08967 Aegilops tauschii F775_08967 I
F775_23034 Aegilops tauschii F775_23034 I
F775_28392 Aegilops tauschii F775_28392 I
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I
GAM1 Oryza indica BGIOSGA004670 I
Gam1 Hordeum vulgare Q96464_HORVU D
GAM1_ORYSI Oryza sativa GAM1_ORYSI D
GAMYB Oryza sativa OS01G0812000 I
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I
GLYMA04G15150 Glycine max GLYMA04G15150 I
GLYMA06G47000 Glycine max GLYMA06G47000 I
GLYMA08G42920 Glycine max GLYMA08G42920 I
GLYMA08G42955 Glycine max GLYMA08G42955 I
GLYMA12G31950 Glycine max GLYMA12G31950 I
GLYMA13G04031 Glycine max GLYMA13G04031 I
GLYMA13G25716 Glycine max GLYMA13G25716 I
GLYMA13G38521 Glycine max GLYMA13G38521 I
GLYMA15G35860 Glycine max GLYMA15G35860 I
GLYMA18G10921 Glycine max GLYMA18G10921 I
GLYMA20G11040 Glycine max GLYMA20G11040 I
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I
Gorai.007G312400 Gossypium raimondii Gorai.007G312400 I
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I
GRMZM2G028054 Zea mays GRMZM2G028054 I
GRMZM2G070523 Zea mays GRMZM2G070523 I
GRMZM2G139688 Zea mays GRMZM2G139688 I
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I
LPERR05G16930 Leersia perrieri LPERR05G16930 I
Lus10008685.g Linum usitatissimum Lus10008685.g I
Lus10021539.g Linum usitatissimum Lus10021539.g I
Lus10026142.g Linum usitatissimum Lus10026142.g I
Lus10026787.g Linum usitatissimum Lus10026787.g I
Lus10027189.g Linum usitatissimum Lus10027189.g I
Lus10035275.g Linum usitatissimum Lus10035275.g I
Lus10036103.g Linum usitatissimum Lus10036103.g I
Lus10040063.g Linum usitatissimum Lus10040063.g I
MDP0000147309 Malus domestica MDP0000147309 I
MDP0000151688 Malus domestica MDP0000151688 I
MDP0000175835 Malus domestica MDP0000175835 I
MDP0000176798 Malus domestica MDP0000176798 I
MDP0000179306 Malus domestica MDP0000179306 I
MDP0000308617 Malus domestica MDP0000308617 I
mgf002965m Mimulus guttatus mgf002965m I
mgf010934m Mimulus guttatus mgf010934m I
mgf019173m Mimulus guttatus mgf019173m I
mgf020500m Mimulus guttatus mgf020500m I
mgf025568m Mimulus guttatus mgf025568m I
MLOC_6041 Hordeum vulgare MLOC_6041 I
MTR_1g021230 Medicago truncatula MTR_1g021230 I
MTR_2g088170 Medicago truncatula MTR_2g088170 I
MTR_3g011610 Medicago truncatula MTR_3g011610 I
MTR_3g052430 Medicago truncatula MTR_3g052430 I
MTR_3g052450 Medicago truncatula MTR_3g052450 I
MTR_8g042410 Medicago truncatula MTR_8g042410 I
myb.Ph3 Petunia x hybrida Q02994_PETHY D
MYB101 Arabidopsis thaliana AT2G32460 D
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I
MYB101 Populus trichocarpa POPTR_0002s21300 I
MYB101 Vitis vinifera VIT_12s0059g00700 I
MYB33 Arabidopsis thaliana AT5G06100 D
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I
MYB97 Arabidopsis thaliana AT4G26930 I
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I
OB01G43550 Oryza brachyantha OB01G43550 I
OB03G32840 Oryza brachyantha OB03G32840 I
OBART01G34660 Oryza barthii OBART01G34660 I
OBART03G24120 Oryza barthii OBART03G24120 I
OBART05G21120 Oryza barthii OBART05G21120 I
OBART06G20450 Oryza barthii OBART06G20450 I
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I
OLONG_019401 Oryza longistaminata OLONG_019401 I
OLONG_020610 Oryza longistaminata OLONG_020610 I
OLONG_025057 Oryza longistaminata OLONG_025057 I
OMERI01G31990 Oryza meridionalis OMERI01G31990 I
OMERI03G21920 Oryza meridionalis OMERI03G21920 I
OMERI06G21070 Oryza meridionalis OMERI06G21070 I
ONIVA04G15310 Oryza nivara ONIVA04G15310 I
ONIVA05G21800 Oryza nivara ONIVA05G21800 I
ONIVA06G24230 Oryza nivara ONIVA06G24230 I
OPUNC03G22220 Oryza punctata OPUNC03G22220 I
OPUNC05G18800 Oryza punctata OPUNC05G18800 I
OPUNC06G18670 Oryza punctata OPUNC06G18670 I
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I
OS03G0578900 Oryza sativa OS03G0578900 I
OS05G0490600 Oryza sativa OS05G0490600 I
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I
PK15478.1 Cannabis sativa PK15478.1 I
PK17293.1 Cannabis sativa PK17293.1 I
Pm011812 Prunus mume Pm011812 I
Pm015094 Prunus mume Pm015094 I
Pm016605 Prunus mume Pm016605 I
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I
Sb01g015920 Sorghum bicolor Sb01g015920 I
Sb03g037680 Sorghum bicolor Sb03g037680 I
Sb10g023665 Sorghum bicolor Sb10g023665 I
Sb10g027280 Sorghum bicolor Sb10g027280 I
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I
Si000907m.g Setaria italica Si000907m.g I
Si006555m.g Setaria italica Si006555m.g I
Si007070m.g Setaria italica Si007070m.g I
Si039629m.g Setaria italica Si039629m.g I
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I
TCM_011907 Theobroma cacao TCM_011907 I
TCM_030853 Theobroma cacao TCM_030853 I
TCM_041010 Theobroma cacao TCM_041010 I
TCM_044611 Theobroma cacao TCM_044611 I
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I
TRIUR3_15006 Triticum urartu TRIUR3_15006 I
TRIUR3_17146 Triticum urartu TRIUR3_17146 I
TRIUR3_17275 Triticum urartu TRIUR3_17275 I
TRIUR3_20797 Triticum urartu TRIUR3_20797 I
TRIUR3_27104 Triticum urartu TRIUR3_27104 I
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I