CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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B39674
(
Xenopus laevis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
B39674
T051339_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Usf1
M01732_2.00
Mus musculus
NRYCACGTGNN
NNCACGTGRYN
PBM
Weirauch et al.(2014)
pTH4376
0.914
1.000
USF1
M02792_2.00
Homo sapiens
RNCACGTGRY
RYCACGTGNY
SELEX
Jolma et al.(2013)
USF1_1
0.914
1.000
USF1
M04146_2.00
Homo sapiens
NVCACGTGVCN
NGBCACGTGBN
SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX
0.914
1.000
USF1
M08056_2.00
Homo sapiens
RGTCACRTGVB
VBCAYGTGACY
ChIP-seq
Mathelier et al.(2014)
MA0093.2
0.914
1.000
USF1
M07807_2.00
Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha
0.914
1.000
USF1
M07808_2.00
Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB
ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha
0.914
1.000
USF1
M07809_2.00
Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha
0.914
1.000
USF1
M07810_2.00
Homo sapiens
VGTCACGTGRB
VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha
0.914
1.000
USF1
M07811_2.00
Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha
0.914
1.000
USF1
M08733_2.00
Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB
Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A
0.914
1.000
Usf1
M08756_2.00
Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN
Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A
0.914
1.000
USF1
M09460_2.00
Homo sapiens
YCACGTGRBN
NVYCACGTGR
Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465
0.914
1.000
USF1
M09867_2.00
Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN
Transfac
Matys et al.(2006)
V$USF_01
0.914
1.000
USF1
M09868_2.00
Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN
Transfac
Matys et al.(2006)
V$USF_02
0.914
1.000
USF1
M09869_2.00
Homo sapiens
HCACGTGH
DCACGTGD
Transfac
Matys et al.(2006)
V$USF_C
0.914
1.000
USF1
M04147_2.00
Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB
SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX
0.914
1.000
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
B39674
bHLH
193
248
RRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELR
Links
Other
bHLH
family TFs
Other
Xenopus laevis
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29736.m002027
Ricinus communis
29736.m002027
N
AMTR_s00133p00020030
Amborella trichopoda
AMTR_s00133p00020030
N
Aquca_002_00510
Aquilegia coerulea
Aquca_002_00510
N
ATWHY1
Arabidopsis lyrata
fgenesh2_kg.1__1569__AT1G14410.1
N
ATWHY3
Arabidopsis lyrata
fgenesh2_kg.5__172__AT2G02740.1
N
BGIOSGA022297
Oryza indica
BGIOSGA022297
N
Bo7g080560
Brassica oleracea
Bo7g080560
N
Bo8g066030
Brassica oleracea
Bo8g066030
N
Bostr.0556s0088
Boechera stricta
Bostr.0556s0088
N
Bra016702
Brassica rapa
Bra016702
N
Bra024809
Brassica rapa
Bra024809
N
BRADI1G51040
Brachypodium distachyon
BRADI1G51040
N
Cagra.0534s0030
Capsella grandiflora
Cagra.0534s0030
N
Cagra.3501s0060
Capsella grandiflora
Cagra.3501s0060
N
Carubv10010024m.g
Capsella rubella
Carubv10010024m.g
N
Carubv10017841m.g
Capsella rubella
Carubv10017841m.g
N
cassava35817.valid.m1
Manihot esculenta
cassava35817.valid.m1
N
Ciclev10032427m.g
Citrus clementina
Ciclev10032427m.g
N
Cla022217
Citrullus lanatus
Cla022217
N
Eucgr.G02539
Eucalyptus grandis
Eucgr.G02539
N
evm.TU.supercontig_1007.4
Carica papaya
evm.TU.supercontig_1007.4
N
GLYMA08G40850
Glycine max
GLYMA08G40850
N
GLYMA18G16200
Glycine max
GLYMA18G16200
N
Gorai.013G077400
Gossypium raimondii
Gorai.013G077400
N
GRMZM2G155662
Zea mays
GRMZM2G155662
N
GSMUA_Achr10G21100_001
Musa acuminata
GSMUA_Achr10G21100_001
N
LPERR06G02670
Leersia perrieri
LPERR06G02670
N
MDP0000268451
Malus domestica
MDP0000268451
N
mgf002465m
Mimulus guttatus
mgf002465m
N
MLOC_11586
Hordeum vulgare
MLOC_11586
N
OBART06G03050
Oryza barthii
OBART06G03050
N
OMERI06G03280
Oryza meridionalis
OMERI06G03280
N
OMERI07G11550
Oryza meridionalis
OMERI07G11550
N
ONIVA06G03980
Oryza nivara
ONIVA06G03980
N
OPUNC06G02750
Oryza punctata
OPUNC06G02750
N
orange1.1g024467m.g
Citrus sinensis
orange1.1g024467m.g
N
ORGLA06G0029900
Oryza glaberrima
ORGLA06G0029900
N
ORUFI06G03010
Oryza rufipogon
ORUFI06G03010
N
OS06G0145800
Oryza sativa
OS06G0145800
N
Pavir.Da02402
Panicum virgatum
Pavir.Da02402
N
Pavir.Db02235
Panicum virgatum
Pavir.Db02235
N
PGSC0003DMG400017627
Solanum tuberosum
PGSC0003DMG400017627
N
PK22670.1
Cannabis sativa
PK22670.1
N
POPTR_0008s14840
Populus trichocarpa
POPTR_0008s14840
N
POPTR_0010s10260
Populus trichocarpa
POPTR_0010s10260
N
SapurV1A.0609s0180
Salix purpurea
SapurV1A.0609s0180
N
Sb10g003170
Sorghum bicolor
Sb10g003170
N
Si006951m.g
Setaria italica
Si006951m.g
N
Solyc05g007100.2
Solanum lycopersicum
Solyc05g007100.2
N
TCM_011795
Theobroma cacao
TCM_011795
N
Thhalv10004763m.g
Eutrema salsugineum
Thhalv10004763m.g
N
Traes_4AL_FE94301FD
Triticum aestivum
Traes_4AL_FE94301FD
N
Traes_7DS_B1FD1C84F
Triticum aestivum
Traes_7DS_B1FD1C84F
N
VIT_01s0026g01720
Vitis vinifera
VIT_01s0026g01720
N
WHY1
Arabidopsis thaliana
AT1G14410
N
WHY3
Arabidopsis thaliana
AT2G02740
N