Cagra.3501s0060 (Capsella grandiflora)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Cagra.3501s0060 T350618_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3501s0060.1.p Whirly 90 225

Links

Other Whirly family TFs
Other Capsella grandiflora TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10010024m.g Capsella rubella Carubv10010024m.g N 0.993
WHY1 Arabidopsis thaliana AT1G14410 N 0.956
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N 0.956
Bo8g066030 Brassica oleracea Bo8g066030 N 0.934
Bra016702 Brassica rapa Bra016702 N 0.926
Bra024809 Brassica rapa Bra024809 N 0.919
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.919
WHY3 Arabidopsis thaliana AT2G02740 N 0.912
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.912
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N 0.912
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N 0.912
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 0.912
Bo7g080560 Brassica oleracea Bo7g080560 N 0.904
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.904
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.890
MDP0000268451 Malus domestica MDP0000268451 N 0.882
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N 0.875
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.875
Pm006558 Prunus mume Pm006558 N 0.875
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.875
TCM_011795 Theobroma cacao TCM_011795 N 0.868
PK22670.1 Cannabis sativa PK22670.1 N 0.860
29736.m002027 Ricinus communis 29736.m002027 N 0.846
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.846
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.846
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.838
Cla022217 Citrullus lanatus Cla022217 N 0.838
mgf002465m Mimulus guttatus mgf002465m N 0.838
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N 0.831
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.824
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.824
Lus10036723.g Linum usitatissimum Lus10036723.g N 0.824
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N 0.824
LjSGA_035916.1.1 Lotus japonicus LjSGA_035916.1.1 N 0.811
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.801
Cucsa.005520 Cucumis sativus Cucsa.005520 N 0.801
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.794
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N 0.787
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.765
Ca_24297 Cicer arietinum Ca_24297 N 0.765
Traes_7AS_45F0BB787 Triticum aestivum Traes_7AS_45F0BB787 N 0.763
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N 0.750
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.750
Si006951m.g Setaria italica Si006951m.g N 0.750
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N 0.750
Traes_7DS_B1FD1C84F Triticum aestivum Traes_7DS_B1FD1C84F N 0.747
MLOC_11586 Hordeum vulgare MLOC_11586 N 0.743
Sb10g003170 Sorghum bicolor Sb10g003170 N 0.743
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N 0.743
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N 0.743
GRMZM2G155662 Zea mays GRMZM2G155662 N 0.735
PDK_20s1701491g001 Phoenix dactylifera PDK_20s1701491g001 N 0.730
BGIOSGA022297 Oryza indica BGIOSGA022297 N 0.728
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N 0.728
LPERR06G02670 Leersia perrieri LPERR06G02670 N 0.728
OBART06G03050 Oryza barthii OBART06G03050 N 0.728
OMERI06G03280 Oryza meridionalis OMERI06G03280 N 0.728
OMERI07G11550 Oryza meridionalis OMERI07G11550 N 0.728
ONIVA06G03980 Oryza nivara ONIVA06G03980 N 0.728
OPUNC06G02750 Oryza punctata OPUNC06G02750 N 0.728
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N 0.728
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N 0.728
OS06G0145800 Oryza sativa OS06G0145800 N 0.728
LjSGA_053590.1 Lotus japonicus LjSGA_053590.1 N 0.720
MTR_8g468570 Medicago truncatula MTR_8g468570 N 0.706