LjSGA_053590.1 (Lotus japonicus)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 LjSGA_053590.1 T350660_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_053590.1 Whirly 110 191

Links

Other Whirly family TFs
Other Lotus japonicus TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.841
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.829
Cla022217 Citrullus lanatus Cla022217 N 0.817
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.817
TCM_011795 Theobroma cacao TCM_011795 N 0.805
Cucsa.005520 Cucumis sativus Cucsa.005520 N 0.805
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.793
29736.m002027 Ricinus communis 29736.m002027 N 0.780
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.780
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.780
MTR_8g468570 Medicago truncatula MTR_8g468570 N 0.768
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.768
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.756
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.756
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.756
Bo7g080560 Brassica oleracea Bo7g080560 N 0.744
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N 0.744
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 0.744
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.744
Bo8g066030 Brassica oleracea Bo8g066030 N 0.732
Bra016702 Brassica rapa Bra016702 N 0.732
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N 0.732
Pm006558 Prunus mume Pm006558 N 0.732
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.732
WHY1 Arabidopsis thaliana AT1G14410 N 0.720
WHY3 Arabidopsis thaliana AT2G02740 N 0.720
Bra024809 Brassica rapa Bra024809 N 0.720
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.720
OMERI07G11550 Oryza meridionalis OMERI07G11550 N 0.720
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.720
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N 0.720
Lus10036723.g Linum usitatissimum Lus10036723.g N 0.720
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.707
Si006951m.g Setaria italica Si006951m.g N 0.707
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N 0.707