Cucsa.005520 (Cucumis sativus)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Cucsa.005520 T350601_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.005520.1 Whirly 99 234
Cucsa.005520.2 Whirly 99 196

Links

Other Whirly family TFs
Other Cucumis sativus TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla022217 Citrullus lanatus Cla022217 N 0.963
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.868
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.868
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.858
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.846
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N 0.838
TCM_011795 Theobroma cacao TCM_011795 N 0.838
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.838
MDP0000268451 Malus domestica MDP0000268451 N 0.838
Bra016702 Brassica rapa Bra016702 N 0.831
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.831
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N 0.824
Pm006558 Prunus mume Pm006558 N 0.824
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.824
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.816
WHY1 Arabidopsis thaliana AT1G14410 N 0.809
WHY3 Arabidopsis thaliana AT2G02740 N 0.809
Bo7g080560 Brassica oleracea Bo7g080560 N 0.809
Bra024809 Brassica rapa Bra024809 N 0.809
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N 0.809
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.809
29736.m002027 Ricinus communis 29736.m002027 N 0.809
mgf002465m Mimulus guttatus mgf002465m N 0.809
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N 0.809
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 0.809
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.809
LjSGA_053590.1 Lotus japonicus LjSGA_053590.1 N 0.805
Bo8g066030 Brassica oleracea Bo8g066030 N 0.801
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.801
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N 0.801
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N 0.801
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N 0.794
Carubv10010024m.g Capsella rubella Carubv10010024m.g N 0.794
Lus10036723.g Linum usitatissimum Lus10036723.g N 0.794
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.787
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.787
PK22670.1 Cannabis sativa PK22670.1 N 0.787
Ca_24297 Cicer arietinum Ca_24297 N 0.757
LjSGA_035916.1.1 Lotus japonicus LjSGA_035916.1.1 N 0.755
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.750
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.750
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N 0.743
Sb10g003170 Sorghum bicolor Sb10g003170 N 0.721
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N 0.713
GRMZM2G155662 Zea mays GRMZM2G155662 N 0.713
MLOC_11586 Hordeum vulgare MLOC_11586 N 0.713
Si006951m.g Setaria italica Si006951m.g N 0.713
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N 0.713
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N 0.713
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N 0.713