Cagra.0534s0030 (Capsella grandiflora)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Cagra.0534s0030 T350617_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0534s0030.1.p Whirly 92 228

Links

Other Whirly family TFs
Other Capsella grandiflora TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 1.000
WHY3 Arabidopsis thaliana AT2G02740 N 0.971
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.971
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N 0.971
Bo7g080560 Brassica oleracea Bo7g080560 N 0.949
Bra024809 Brassica rapa Bra024809 N 0.949
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.949
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N 0.912
Carubv10010024m.g Capsella rubella Carubv10010024m.g N 0.904
WHY1 Arabidopsis thaliana AT1G14410 N 0.897
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N 0.897
Bo8g066030 Brassica oleracea Bo8g066030 N 0.890
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.890
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.890
Bra016702 Brassica rapa Bra016702 N 0.882
TCM_011795 Theobroma cacao TCM_011795 N 0.875
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.868
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.868
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N 0.853
Pm006558 Prunus mume Pm006558 N 0.853
29736.m002027 Ricinus communis 29736.m002027 N 0.853
mgf002465m Mimulus guttatus mgf002465m N 0.846
MDP0000268451 Malus domestica MDP0000268451 N 0.846
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.838
PK22670.1 Cannabis sativa PK22670.1 N 0.838
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.831
Cla022217 Citrullus lanatus Cla022217 N 0.831
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N 0.824
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.824
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.824
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.816
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.809
Cucsa.005520 Cucumis sativus Cucsa.005520 N 0.809
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N 0.809
Lus10036723.g Linum usitatissimum Lus10036723.g N 0.801
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.794
LjSGA_035916.1.1 Lotus japonicus LjSGA_035916.1.1 N 0.792
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N 0.787
MLOC_11586 Hordeum vulgare MLOC_11586 N 0.779
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N 0.779
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.772
Si006951m.g Setaria italica Si006951m.g N 0.772
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N 0.772
Traes_7DS_B1FD1C84F Triticum aestivum Traes_7DS_B1FD1C84F N 0.770
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N 0.765
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.765
Sb10g003170 Sorghum bicolor Sb10g003170 N 0.765
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N 0.765
BGIOSGA022297 Oryza indica BGIOSGA022297 N 0.757
GRMZM2G155662 Zea mays GRMZM2G155662 N 0.757
LPERR06G02670 Leersia perrieri LPERR06G02670 N 0.757
OMERI06G03280 Oryza meridionalis OMERI06G03280 N 0.757
OMERI07G11550 Oryza meridionalis OMERI07G11550 N 0.757
ONIVA06G03980 Oryza nivara ONIVA06G03980 N 0.757
OPUNC06G02750 Oryza punctata OPUNC06G02750 N 0.757
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N 0.757
OS06G0145800 Oryza sativa OS06G0145800 N 0.757
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N 0.750
OBART06G03050 Oryza barthii OBART06G03050 N 0.750
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N 0.750
LjSGA_053590.1 Lotus japonicus LjSGA_053590.1 N 0.744
Ca_24297 Cicer arietinum Ca_24297 N 0.743
PDK_20s1701491g001 Phoenix dactylifera PDK_20s1701491g001 N 0.720
MTR_5g038560 Medicago truncatula MTR_5g038560 N 0.706