CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig576.5
(
Saccharomyces castellii
)
Copper fist
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00649 (Copper-fist)
IPR001083
Scas_Contig576.5
T164173_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MAC1
M08552_2.00
Saccharomyces cerevisiae
TTTGCTCR
YGAGCAAA
Misc
DeBoer et al.(2011)
YMR021C_1540
0.795
0.795
MAC1
M10409_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MAC1_Q6_01
0.795
0.795
MAC1
M10410_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MAC1_Q6
0.795
0.795
MAC1
M08454_2.00
Saccharomyces cerevisiae
TTTGCTCR
YGAGCAAA
COMPILED
Mathelier et al.(2014)
MA0326.1
0.795
0.795
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig576.5
Copper fist
2
40
IIYASEKYACASCIRGHRSSTCKHTNRMLVKVRTRGRPS
Links
Other
Copper fist
family TFs
Other
Saccharomyces castellii
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30093.m000368
Ricinus communis
30093.m000368
N
cassava13878.valid.m1
Manihot esculenta
cassava13878.valid.m1
N
Ca_00041
Cicer arietinum
Ca_00041
N
Cucsa.076000
Cucumis sativus
Cucsa.076000
N
Eucgr.G00356
Eucalyptus grandis
Eucgr.G00356
N
evm.TU.supercontig_161.1
Carica papaya
evm.TU.supercontig_161.1
N
GLYMA05G30150
Glycine max
GLYMA05G30150
N
GLYMA08G13310
Glycine max
GLYMA08G13310
N
Gorai.002G214700
Gossypium raimondii
Gorai.002G214700
N
LjT40J14.40.nc
Lotus japonicus
LjT40J14.40.nc
N
mgf016294m
Mimulus guttatus
mgf016294m
N
PK13777.1
Cannabis sativa
PK13777.1
N
Pm003925
Prunus mume
Pm003925
N
POPTR_0004s23050
Populus trichocarpa
POPTR_0004s23050
N
POPTR_0022s00900
Populus trichocarpa
POPTR_0022s00900
N
PRUPE_ppa007287mg
Prunus persica
PRUPE_ppa007287mg
N
SapurV1A.0136s0510
Salix purpurea
SapurV1A.0136s0510
N
SapurV1A.0470s0060
Salix purpurea
SapurV1A.0470s0060
N
SapurV1A.0618s0010
Salix purpurea
SapurV1A.0618s0010
N
TCM_006252
Theobroma cacao
TCM_006252
N
VIT_12s0035g00660
Vitis vinifera
VIT_12s0035g00660
N