CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

gene24215-v1.0-hybrid *(Fragaria vesca)* FAR1
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03101 (FAR1)	IPR004330	gene24215-v1.0-hybrid	T181450_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FAR1 M06880_2.00	Arabidopsis thaliana	NNYHCACGCGCYDNH	DNHRGCGCGTGDRNN	Dap-seq OMalley et al.(2016) FAR1_col_a	0.898	0.898
FAR1 M06881_2.00	Arabidopsis thaliana	NNNNBDNDNNYHCACGCGCYD	HRGCGCGTGDRNNHNHVNNNN	Dap-seq OMalley et al.(2016) FAR1_colamp_a	0.898	0.898
FHY3 M08114_2.00	Arabidopsis thaliana	NHCACGCGCTNN	NNAGCGCGTGDN	ChIP-seq Mathelier et al.(2014) MA0557.1	0.705	0.705
FHY3 M09540_2.00	Arabidopsis thaliana	NHSACGCGCBNN	NNVGCGCGTSDN	Misc Heinz et al.(2010) Arabidopsis-FHY3_GSE30711	0.705	0.705
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
mrna24215.1-v1.0-hybrid	FAR1	76	163	SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSGSSRRPTVKKTDCKASMHVKRRADGKWIIHEFIKEHNHELLP

Links
Other FAR1 family TFs
Other *Fragaria vesca* TFs