VIT_06s0009g03530 (Vitis vinifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 VIT_06s0009g03530 T224535_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.825 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_06s0009g03530.t01 Homeodomain 19 75

Links

Other Homeodomain family TFs
Other Vitis vinifera TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.628
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.667
Bo9g006450 Brassica oleracea Bo9g006450 I 0.668
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.811
Bra034196 Brassica rapa Bra034196 I 0.668
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.673
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.673
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.733
Cla008712 Citrullus lanatus Cla008712 I 0.642
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.652
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.701
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.629
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.654
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.654
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.808
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.654
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.808
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.614
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.652
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.600
MDP0000207866 Malus domestica MDP0000207866 I 0.640
mgf000172m Mimulus guttatus mgf000172m I 0.609
mgf007720m Mimulus guttatus mgf007720m I 0.693
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.619
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.733
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.633
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.633
PK25011.1 Cannabis sativa PK25011.1 D 0.825
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.629
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.629
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.637
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.629
TCM_040945 Theobroma cacao TCM_040945 I 0.638
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.626