Cagra.1681s0007 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1681s0007 T228217_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1681s0007.1.p Homeodomain 18 76
Cagra.1681s0007.2.p Homeodomain 18 76
Cagra.1681s0007.3.p Homeodomain 18 76
Cagra.1681s0007.4.p Homeodomain 18 76

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30209.m001510 Ricinus communis 30209.m001510 N 0.625
AT3G18380 Arabidopsis thaliana AT3G18380 N 0.854
Bo1g117640 Brassica oleracea Bo1g117640 N 0.710
Bo5g118650 Brassica oleracea Bo5g118650 N 0.848
Bostr.19424s0824 Boechera stricta Bostr.19424s0824 N 0.867
Bra022316 Brassica rapa Bra022316 N 0.795
Bra037587 Brassica rapa Bra037587 N 0.710
Carubv10014092m.g Capsella rubella Carubv10014092m.g N 0.867
CBG05223 Caenorhabditis briggsae CBG05223 N 0.601
Cucsa.032420 Cucumis sativus Cucsa.032420 N 0.752
evm.TU.supercontig_80.16 Carica papaya evm.TU.supercontig_80.16 N 0.744
fgenesh2_kg.3__2039__AT3G18380.2 Arabidopsis lyrata fgenesh2_kg.3__2039__AT3G18380.2 N 0.854
GLYMA12G18490 Glycine max GLYMA12G18490 N 0.795
Gorai.002G065900 Gossypium raimondii Gorai.002G065900 N 0.780
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N 0.769
GRMZM2G111204 Zea mays GRMZM2G111204 N 0.722
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N 0.654
mgf014854m Mimulus guttatus mgf014854m N 0.659
Ogr09559 Ophisaurus gracilis Ogr09559 N 0.605
orange1.1g016887m.g Citrus sinensis orange1.1g016887m.g N 0.757
PK03811.1 Cannabis sativa PK03811.1 N 0.661
Pm011344 Prunus mume Pm011344 N 0.805
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N 0.663
POPTR_0174s00240 Populus trichocarpa POPTR_0174s00240 N 0.752
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N 0.806
TCM_046875 Theobroma cacao TCM_046875 N 0.599
TRIUR3_26093 Triticum urartu TRIUR3_26093 N 0.654