ENSLACG00000001546 (Latimeria chalumnae)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSLACG00000001546 T244127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF1
M08142_2.00 		Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY		 ChIP-seq
Mathelier et al.(2014)
MA0050.2 		0.857 0.857
IRF1
M09233_2.00 		Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A 		0.857 0.857
Irf1
M09242_2.00 		Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB		 Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A 		0.857 0.857
IRF1
M09594_2.00 		Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC		 Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036 		0.857 0.857
IRF1
M10879_2.00 		Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS		 Transfac
Matys et al.(2006)
V$IRF1_01 		0.857 0.857
IRF1
M10880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_03 		0.857 0.857
IRF1
M10881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q5 		0.857 0.857
IRF1
M10882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q6 		0.857 0.857
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.829 0.829
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.829 0.829
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.829 0.829
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.829 0.829
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.829 0.829
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.829 0.829
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.829 0.829
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.819 0.819
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.819 0.819
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000001728 IRF 7 112

Links

Other IRF family TFs
Other Latimeria chalumnae TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006165 Ricinus communis 29908.m006165 I
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I
BGIOSGA005542 Oryza indica BGIOSGA005542 I
BGIOSGA011061 Oryza indica BGIOSGA011061 I
BGIOSGA022531 Oryza indica BGIOSGA022531 I
Bo5g034880 Brassica oleracea Bo5g034880 I
Bo6g004620 Brassica oleracea Bo6g004620 I
Bo6g121400 Brassica oleracea Bo6g121400 I
Bo8g071150 Brassica oleracea Bo8g071150 I
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I
Bra012298 Brassica rapa Bra012298 I
Bra015660 Brassica rapa Bra015660 I
Bra016400 Brassica rapa Bra016400 I
Bra036022 Brassica rapa Bra036022 I
Bra040309 Brassica rapa Bra040309 I
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I
Carubv10010179m.g Capsella rubella Carubv10010179m.g I
Carubv10010259m.g Capsella rubella Carubv10010259m.g I
Carubv10020777m.g Capsella rubella Carubv10020777m.g I
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I
cassava44357.m1 Manihot esculenta cassava44357.m1 I
Ca_25824 Cicer arietinum Ca_25824 I
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I
Cla014165 Citrullus lanatus Cla014165 I
Cla023512 Citrullus lanatus Cla023512 I
Cucsa.365220 Cucumis sativus Cucsa.365220 I
Cucsa.372760 Cucumis sativus Cucsa.372760 I
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I
ERF012 Arabidopsis thaliana AT1G21910 D
ERF013 Arabidopsis thaliana AT1G77640 D
ERF014 Arabidopsis thaliana AT1G44830 D
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I
F775_17148 Aegilops tauschii F775_17148 I
F775_20580 Aegilops tauschii F775_20580 I
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I
GLYMA04G43040 Glycine max GLYMA04G43040 I
GLYMA06G11700 Glycine max GLYMA06G11700 I
GLYMA13G02860 Glycine max GLYMA13G02860 I
GLYMA14G22970 Glycine max GLYMA14G22970 I
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I
GRMZM2G007406 Zea mays GRMZM2G007406 I
GRMZM2G011110 Zea mays GRMZM2G011110 I
GRMZM2G015281 Zea mays GRMZM2G015281 I
GRMZM2G021369 Zea mays GRMZM2G021369 I
GRMZM2G084264 Zea mays GRMZM2G084264 I
GSMUA_Achr10G19460_001 Musa acuminata GSMUA_Achr10G19460_001 I
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I
LPERR02G27720 Leersia perrieri LPERR02G27720 I
LPERR03G10190 Leersia perrieri LPERR03G10190 I
LPERR06G06370 Leersia perrieri LPERR06G06370 I
Lus10003740.g Linum usitatissimum Lus10003740.g I
Lus10028032.g Linum usitatissimum Lus10028032.g I
MDP0000120147 Malus domestica MDP0000120147 I
MDP0000319736 Malus domestica MDP0000319736 I
MDP0000923690 Malus domestica MDP0000923690 I
mgf021045m Mimulus guttatus mgf021045m I
mgf023290m Mimulus guttatus mgf023290m I
MLOC_70931 Hordeum vulgare MLOC_70931 I
MTR_3g072610 Medicago truncatula MTR_3g072610 I
MTR_5g058470 Medicago truncatula MTR_5g058470 I
OB03G21640 Oryza brachyantha OB03G21640 I
OBART03G11470 Oryza barthii OBART03G11470 I
OBART06G07000 Oryza barthii OBART06G07000 I
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I
OMERI02G32260 Oryza meridionalis OMERI02G32260 I
OMERI03G10750 Oryza meridionalis OMERI03G10750 I
OMERI06G08130 Oryza meridionalis OMERI06G08130 I
ONIVA02G33600 Oryza nivara ONIVA02G33600 I
ONIVA03G12660 Oryza nivara ONIVA03G12660 I
ONIVA06G08290 Oryza nivara ONIVA06G08290 I
OPUNC02G31280 Oryza punctata OPUNC02G31280 I
OPUNC03G11030 Oryza punctata OPUNC03G11030 I
OPUNC06G06600 Oryza punctata OPUNC06G06600 I
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I
OS02G0767800 Oryza sativa OS02G0767800 I
OS03G0263000 Oryza sativa OS03G0263000 I
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I
Pavir.J02555 Panicum virgatum Pavir.J02555 I
Pavir.J23882 Panicum virgatum Pavir.J23882 I
Pavir.J26231 Panicum virgatum Pavir.J26231 I
Pavir.J30447 Panicum virgatum Pavir.J30447 I
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I
PK16069.1 Cannabis sativa PK16069.1 I
Pm004870 Prunus mume Pm004870 I
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I
Sb01g040280 Sorghum bicolor Sb01g040280 I
Sb04g034290 Sorghum bicolor Sb04g034290 I
Sb10g006980 Sorghum bicolor Sb10g006980 I
Si007977m.g Setaria italica Si007977m.g I
Si039170m.g Setaria italica Si039170m.g I
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I
TCM_035077 Theobroma cacao TCM_035077 I
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I