chr2.LjT13P17.280.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr2.LjT13P17.280.nd T247414_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.707 0.707
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.707 0.707
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT13P17.280.nd LOB 37 136

Links

Other LOB family TFs
Other Lotus japonicus TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29883.m002035 Ricinus communis 29883.m002035 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.828
30174.m008898 Ricinus communis 30174.m008898 I 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.727
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.707
Bo1g153580 Brassica oleracea Bo1g153580 I 0.798
Bo4g016000 Brassica oleracea Bo4g016000 I 0.707
Bo4g191530 Brassica oleracea Bo4g191530 I 0.707
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.798
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.707
Bra004693 Brassica rapa Bra004693 I 0.707
Bra036436 Brassica rapa Bra036436 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.737
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.798
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.798
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.828
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.838
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.707
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.707
Ca_12213 Cicer arietinum Ca_12213 I 0.717
Ca_19716 Cicer arietinum Ca_19716 I 0.768
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.707
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.778
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.818
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
Cla002965 Citrullus lanatus Cla002965 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.727
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.747
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.727
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.717
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.737
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.788
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.808
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.707
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.808
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.788
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.808
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.707
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.717
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.717
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.727
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.758
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.759
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
LBD16 Arabidopsis thaliana AT2G42430 D 0.707
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.707
LBD20 Arabidopsis thaliana AT3G03760 I 0.798
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.798
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.808
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.818
mgf006429m Mimulus guttatus mgf006429m I 0.798
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.747
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.747
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.707
OB10G12360 Oryza brachyantha OB10G12360 I 0.717
OBART03G10450 Oryza barthii OBART03G10450 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.727
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.707
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.733
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.727
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.707
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.727
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.707
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.818
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.727
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.707
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.727
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.707
OS03G0246900 Oryza sativa OS03G0246900 I 0.727
OS10G0162600 Oryza sativa OS10G0162600 I 0.707
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.717
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.778
Pm017936 Prunus mume Pm017936 I 0.717
Pm020629 Prunus mume Pm020629 I 0.707
Pm028642 Prunus mume Pm028642 I 0.808
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.808
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.808
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.707
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.809
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.727
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.747
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.747
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.768
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.707
TCM_004106 Theobroma cacao TCM_004106 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.808
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.707
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.798
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.747
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.747
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.747