Cla012709 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla012709 T256964_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.833 0.833
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.833 0.833
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.729 0.729
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.708 0.708
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.708 0.708
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla012709 MADS box 10 57

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29907.m000663 Ricinus communis 29907.m000663 I 0.875
AGL12 Arabidopsis thaliana AT1G71692 D 0.833
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.833
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.938
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.750
AGL3 Arabidopsis thaliana AT2G03710 D 0.708
AMTR_s00001p00267050 Amborella trichopoda AMTR_s00001p00267050 I 0.708
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.833
Aquca_013_00477 Aquilegia coerulea Aquca_013_00477 I 0.708
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.792
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.833
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.833
Bo2g073010 Brassica oleracea Bo2g073010 I 0.833
Bo2g137070 Brassica oleracea Bo2g137070 I 0.708
Bo6g094120 Brassica oleracea Bo6g094120 I 0.830
Bo6g113110 Brassica oleracea Bo6g113110 I 0.833
Bo7g081460 Brassica oleracea Bo7g081460 I 0.708
Bo9g074400 Brassica oleracea Bo9g074400 I 0.708
Bostr.0556s0185 Boechera stricta Bostr.0556s0185 I 0.708
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.812
Bra003919 Brassica rapa Bra003919 I 0.830
Bra007972 Brassica rapa Bra007972 I 0.833
Bra016128 Brassica rapa Bra016128 I 0.854
Bra026543 Brassica rapa Bra026543 I 0.708
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.729
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.833
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.750
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.750
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.812
Cagra.0447s0009 Capsella grandiflora Cagra.0447s0009 I 0.708
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.833
Carubv10017787m.g Capsella rubella Carubv10017787m.g I 0.708
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.833
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.917
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
cassava32526.m1 Manihot esculenta cassava32526.m1 I 0.708
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.875
Ca_19954 Cicer arietinum Ca_19954 I 0.917
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.917
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.729
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.938
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.917
Eucgr.K00207 Eucalyptus grandis Eucgr.K00207 I 0.708
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.896
evm.TU.supercontig_3.196 Carica papaya evm.TU.supercontig_3.196 I 0.708
evm.TU.supercontig_660.1 Carica papaya evm.TU.supercontig_660.1 I 0.729
F775_05799 Aegilops tauschii F775_05799 I 0.854
F775_07497 Aegilops tauschii F775_07497 I 0.708
F775_26271 Aegilops tauschii F775_26271 I 0.854
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.729
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.833
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.708
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.938
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.938
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.938
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.787
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.809
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.812
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.875
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.750
GSMUA_Achr2G11820_001 Musa acuminata GSMUA_Achr2G11820_001 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
GSMUA_Achr5G10250_001 Musa acuminata GSMUA_Achr5G10250_001 I 0.729
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.830
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.854
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.854
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.854
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.854
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.708
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.708
MADS26 Oryza sativa OS08G0112700 D 0.833
MDP0000149676 Malus domestica MDP0000149676 I 0.708
MDP0000179718 Malus domestica MDP0000179718 I 0.727
MDP0000192806 Malus domestica MDP0000192806 I 0.896
MDP0000193953 Malus domestica MDP0000193953 I 0.896
MDP0000248130 Malus domestica MDP0000248130 I 0.708
MDP0000270062 Malus domestica MDP0000270062 I 0.708
MDP0000316609 Malus domestica MDP0000316609 I 0.875
mgf017448m Mimulus guttatus mgf017448m I 0.938
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.854
MLOC_65843 Hordeum vulgare MLOC_65843 I 0.708
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.917
O82699_MALDO Malus domestica O82699_MALDO D 0.708
OB04G21020 Oryza brachyantha OB04G21020 I 0.833
OB08G11080 Oryza brachyantha OB08G11080 I 0.854
OBART04G13770 Oryza barthii OBART04G13770 I 0.854
OBART04G13800 Oryza barthii OBART04G13800 I 0.854
OBART08G00930 Oryza barthii OBART08G00930 I 0.833
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.833
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.854
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.833
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.833
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.854
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.854
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.833
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.854
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.833
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.833
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.854
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.896
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.729
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.833
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.854
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.854
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.833
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.708
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.771
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.792
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.750
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.854
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.875
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.854
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.708
PGSC0003DMG400010263 Solanum tuberosum PGSC0003DMG400010263 I 0.708
PGSC0003DMG400028359 Solanum tuberosum PGSC0003DMG400028359 I 0.708
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.938
PK21769.1 Cannabis sativa PK21769.1 I 0.708
PK26896.1 Cannabis sativa PK26896.1 I 0.875
PK27158.1 Cannabis sativa PK27158.1 I 0.714
Pm004239 Prunus mume Pm004239 I 0.833
Pm019404 Prunus mume Pm019404 I 0.708
POPTR_0003s16800 Populus trichocarpa POPTR_0003s16800 I 0.708
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.917
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.917
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.833
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.708
Q40591_TOBAC Nicotiana tabacum Q40591_TOBAC D 0.708
Q9ATE8_PETHY Petunia x hybrida Q9ATE8_PETHY D 0.708
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.917
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.938
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.938
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.771
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.854
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SEP4 Arabidopsis lyrata Al_scaffold_0005_309 I 0.708
Si012632m.g Setaria italica Si012632m.g I 0.792
Si014419m.g Setaria italica Si014419m.g I 0.854
Si024640m.g Setaria italica Si024640m.g I 0.708
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.729
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.938
TCM_036568 Theobroma cacao TCM_036568 I 0.917
Thhalv10004767m.g Eutrema salsugineum Thhalv10004767m.g I 0.708
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.830
Traes_1AL_5F5A87122 Triticum aestivum Traes_1AL_5F5A87122 I 0.708
Traes_1BL_B44C0D37C Triticum aestivum Traes_1BL_B44C0D37C I 0.708
Traes_1DL_6DA0DFC5B Triticum aestivum Traes_1DL_6DA0DFC5B I 0.708
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.854
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.854
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.854
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.854
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.854
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.854
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.854
TRIUR3_24724 Triticum urartu TRIUR3_24724 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
XM_002310609.1 Populus trichocarpa POPTR_0007s07620 I 0.708