CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM08G00990
(
Oryza glumaepatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
OGLUM08G00990
T255068_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
1.000
1.000
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.766
0.766
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.723
0.723
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.723
0.723
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.723
0.723
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.702
0.702
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM08G00990.1
MADS box
10
56
RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD
Links
Other
MADS box
family TFs
Other
Oryza glumaepatula
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
1.000
OBART08G00930
Oryza barthii
OBART08G00930
I
1.000
OLONG_011815
Oryza longistaminata
OLONG_011815
I
1.000
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
1.000
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
1.000
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
1.000
MADS26
Oryza sativa
OS08G0112700
D
1.000
F775_26271
Aegilops tauschii
F775_26271
I
0.957
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.957
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.957
OB08G11080
Oryza brachyantha
OB08G11080
I
0.957
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.957
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.957
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.957
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.957
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.957
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.936
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.936
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.936
Si014419m.g
Setaria italica
Si014419m.g
I
0.936
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.936
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.915
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.894
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.875
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.872
PK26896.1
Cannabis sativa
PK26896.1
I
0.872
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.867
TCM_036568
Theobroma cacao
TCM_036568
I
0.854
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.854
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.854
29907.m000663
Ricinus communis
29907.m000663
I
0.851
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.851
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.842
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.833
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.833
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.833
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.833
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.833
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.833
Ca_19954
Cicer arietinum
Ca_19954
I
0.833
Cla012709
Citrullus lanatus
Cla012709
I
0.833
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.833
mgf017448m
Mimulus guttatus
mgf017448m
I
0.833
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.833
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.833
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.833
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.833
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.830
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.830
Pm004239
Prunus mume
Pm004239
I
0.830
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.812
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.812
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.812
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.812
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.809
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.809
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.809
OB04G21020
Oryza brachyantha
OB04G21020
I
0.809
Si012632m.g
Setaria italica
Si012632m.g
I
0.809
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.809
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.792
OBART04G13800
Oryza barthii
OBART04G13800
I
0.792
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.792
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.792
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.792
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.792
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.792
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.792
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.792
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.792
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.792
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.787
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.787
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.787
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.787
MDP0000316609
Malus domestica
MDP0000316609
I
0.787
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.787
F775_05799
Aegilops tauschii
F775_05799
I
0.771
OBART04G13770
Oryza barthii
OBART04G13770
I
0.771
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.771
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.771
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.771
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.771
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.771
MDP0000192806
Malus domestica
MDP0000192806
I
0.771
MDP0000193953
Malus domestica
MDP0000193953
I
0.771
AGL12
Arabidopsis thaliana
AT1G71692
D
0.766
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.766
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.766
Bra007972
Brassica rapa
Bra007972
I
0.766
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.766
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.766
Si024640m.g
Setaria italica
Si024640m.g
I
0.766
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.766
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.766
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.766
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
Bra016128
Brassica rapa
Bra016128
I
0.750
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.750
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.745
Bra003919
Brassica rapa
Bra003919
I
0.745
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.745
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.745
Cucsa.331900
Cucumis sativus
Cucsa.331900
I
0.745
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.745
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.745
PK27158.1
Cannabis sativa
PK27158.1
I
0.743
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.729
cassava26340.m1
Manihot esculenta
cassava26340.m1
I
0.729
Gorai.008G018100
Gossypium raimondii
Gorai.008G018100
I
0.729
SapurV1A.0019s1110
Salix purpurea
SapurV1A.0019s1110
I
0.729
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.727
Sb08g006430
Sorghum bicolor
Sb08g006430
I
0.723
evm.TU.supercontig_660.1
Carica papaya
evm.TU.supercontig_660.1
I
0.723
ANR1
Arabidopsis thaliana
AT2G14210
I
0.708
BRADI4G06867
Brachypodium distachyon
BRADI4G06867
I
0.708
F775_07497
Aegilops tauschii
F775_07497
I
0.708
GLYMA08G06991
Glycine max
GLYMA08G06991
I
0.708
GSMUA_Achr2G11820_001
Musa acuminata
GSMUA_Achr2G11820_001
I
0.708
GSMUA_Achr5G10250_001
Musa acuminata
GSMUA_Achr5G10250_001
I
0.708
MLOC_65843
Hordeum vulgare
MLOC_65843
I
0.708
PGSC0003DMG400001938
Solanum tuberosum
PGSC0003DMG400001938
I
0.708
Solyc04g005320.2
Solanum lycopersicum
Solyc04g005320.2
I
0.708
Solyc05g012020.2
Solanum lycopersicum
Solyc05g012020.2
D
0.708
TCM_007324
Theobroma cacao
TCM_007324
I
0.708
Traes_1AL_5F5A87122
Triticum aestivum
Traes_1AL_5F5A87122
I
0.708
Traes_1BL_B44C0D37C
Triticum aestivum
Traes_1BL_B44C0D37C
I
0.708
Traes_1DL_6DA0DFC5B
Triticum aestivum
Traes_1DL_6DA0DFC5B
I
0.708
TRIUR3_24724
Triticum urartu
TRIUR3_24724
I
0.708
Ca_14956
Cicer arietinum
Ca_14956
I
0.708
29804.m001536
Ricinus communis
29804.m001536
I
0.708
Bostr.13083s0004
Boechera stricta
Bostr.13083s0004
I
0.708
Cagra.3821s0004
Capsella grandiflora
Cagra.3821s0004
I
0.708
Carubv10015972m.g
Capsella rubella
Carubv10015972m.g
I
0.708
Ciclev10032489m.g
Citrus clementina
Ciclev10032489m.g
I
0.708
Eucgr.I02600
Eucalyptus grandis
Eucgr.I02600
I
0.708
evm.TU.supercontig_3.196
Carica papaya
evm.TU.supercontig_3.196
I
0.708
Lus10042918.g
Linum usitatissimum
Lus10042918.g
I
0.708
orange1.1g036652m.g
Citrus sinensis
orange1.1g036652m.g
I
0.708
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.708
SapurV1A.1370s0060
Salix purpurea
SapurV1A.1370s0060
I
0.708
SapurV1A.2345s0030
Salix purpurea
SapurV1A.2345s0030
I
0.708
PRUPE_ppa010679mg
Prunus persica
PRUPE_ppa010679mg
I
0.702
ANR1
Vitis vinifera
VIT_18s0001g07900
I
0.702
Pm007034
Prunus mume
Pm007034
I
0.702
mgf021543m
Mimulus guttatus
mgf021543m
I
0.702
Gorai.003G090800
Gossypium raimondii
Gorai.003G090800
I
0.702
Pavir.Ea03607
Panicum virgatum
Pavir.Ea03607
I
0.702
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.702
Thhalv10022995m.g
Eutrema salsugineum
Thhalv10022995m.g
I
0.702
PK26778.1
Cannabis sativa
PK26778.1
I
0.700