CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene27105-v1.0-hybrid
(
Fragaria vesca
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
gene27105-v1.0-hybrid
T258367_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.851
0.851
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.787
0.787
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.745
0.745
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.702
0.702
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.702
0.702
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.702
0.702
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.702
0.702
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.702
0.702
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.702
0.702
AGL3
M10910_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.702
0.702
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.702
0.702
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna27105.1-v1.0-hybrid
MADS box
10
56
KIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFE
Links
Other
MADS box
family TFs
Other
Fragaria vesca
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm004239
Prunus mume
Pm004239
I
0.957
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.957
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.900
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.896
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.895
MDP0000316609
Malus domestica
MDP0000316609
I
0.894
MDP0000193953
Malus domestica
MDP0000193953
I
0.875
MDP0000192806
Malus domestica
MDP0000192806
I
0.875
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.872
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.872
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.867
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.854
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.854
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.854
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.851
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.851
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.851
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.851
AGL12
Arabidopsis thaliana
AT1G71692
D
0.851
Bra016128
Brassica rapa
Bra016128
I
0.851
Bra007972
Brassica rapa
Bra007972
I
0.851
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.851
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.851
Ca_19954
Cicer arietinum
Ca_19954
I
0.833
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.833
Cla012709
Citrullus lanatus
Cla012709
I
0.833
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.833
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.833
TCM_036568
Theobroma cacao
TCM_036568
I
0.833
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.833
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.833
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.833
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.833
mgf017448m
Mimulus guttatus
mgf017448m
I
0.833
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.833
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.833
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.833
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.833
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.833
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.830
F775_26271
Aegilops tauschii
F775_26271
I
0.830
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.830
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.830
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.830
PK26896.1
Cannabis sativa
PK26896.1
I
0.830
Bra003919
Brassica rapa
Bra003919
I
0.830
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.830
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.830
OB08G11080
Oryza brachyantha
OB08G11080
I
0.830
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.830
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.830
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.830
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.830
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.830
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.830
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.830
OB04G21020
Oryza brachyantha
OB04G21020
I
0.830
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.830
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.812
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.812
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.812
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.812
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.812
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.812
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.812
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.812
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.812
OBART04G13800
Oryza barthii
OBART04G13800
I
0.812
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.812
F775_05799
Aegilops tauschii
F775_05799
I
0.812
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.812
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.812
OBART04G13770
Oryza barthii
OBART04G13770
I
0.812
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.812
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.812
Si014419m.g
Setaria italica
Si014419m.g
I
0.809
Si012632m.g
Setaria italica
Si012632m.g
I
0.809
29907.m000663
Ricinus communis
29907.m000663
I
0.809
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.809
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.809
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.809
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.809
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.809
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.809
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.792
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.792
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.787
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.787
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.787
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
0.787
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
0.787
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
0.787
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
0.787
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
0.787
MADS26
Oryza sativa
OS08G0112700
D
0.787
OLONG_011815
Oryza longistaminata
OLONG_011815
I
0.787
OBART08G00930
Oryza barthii
OBART08G00930
I
0.787
AGL18
Vitis vinifera
VIT_08s0007g08790
I
0.771
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.766
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.766
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.766
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.766
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.758
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.750
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.750
Sb08g006430
Sorghum bicolor
Sb08g006430
I
0.745
FBP24_PETHY
Petunia x hybrida
FBP24_PETHY
D
0.745
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.745
GSMUA_Achr2G02660_001
Musa acuminata
GSMUA_Achr2G02660_001
I
0.729
gene20808-v1.0-hybrid
Fragaria vesca
gene20808-v1.0-hybrid
I
0.729
estExt_fgenesh1_kg.C_260002
Physcomitrella patens
estExt_fgenesh1_kg.C_260002
I
0.729
GLYMA02G33040
Glycine max
GLYMA02G33040
I
0.729
MTR_1g053070
Medicago truncatula
MTR_1g053070
I
0.729
MDP0000233948
Malus domestica
MDP0000233948
I
0.729
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.724
PK20651.1
Cannabis sativa
PK20651.1
I
0.723
evm.TU.supercontig_125.55
Carica papaya
evm.TU.supercontig_125.55
I
0.723
PGSC0003DMG401006771
Solanum tuberosum
PGSC0003DMG401006771
I
0.723
MDP0000209705
Malus domestica
MDP0000209705
I
0.723
e_gw1.209.37.1
Physcomitrella patens
e_gw1.209.37.1
I
0.723
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.723
Pavir.J10823
Panicum virgatum
Pavir.J10823
I
0.723
e_gw1.171.4.1
Physcomitrella patens
e_gw1.171.4.1
I
0.723
Si024640m.g
Setaria italica
Si024640m.g
I
0.723
Solyc01g087990.2
Solanum lycopersicum
Solyc01g087990.2
I
0.723
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
Ciclev10032489m.g
Citrus clementina
Ciclev10032489m.g
I
0.708
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.708
Pavir.Db00414
Panicum virgatum
Pavir.Db00414
I
0.708
orange1.1g036652m.g
Citrus sinensis
orange1.1g036652m.g
I
0.708
MDP0000144516
Malus domestica
MDP0000144516
I
0.708
MDP0000135652
Malus domestica
MDP0000135652
I
0.708
Solyc11g005120.1
Solanum lycopersicum
Solyc11g005120.1
I
0.708
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.708
Pm002166
Prunus mume
Pm002166
I
0.708
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.708
Cla006333
Citrullus lanatus
Cla006333
I
0.708
GSMUA_Achr2G04350_001
Musa acuminata
GSMUA_Achr2G04350_001
I
0.708
GSMUA_Achr3G23580_001
Musa acuminata
GSMUA_Achr3G23580_001
I
0.708
SELMODRAFT_449594
Selaginella moellendorffii
SELMODRAFT_449594
I
0.708
BRADI2G57000
Brachypodium distachyon
BRADI2G57000
I
0.708
Aquca_022_00241
Aquilegia coerulea
Aquca_022_00241
I
0.708
AMTR_s00053p00228660
Amborella trichopoda
AMTR_s00053p00228660
I
0.708
mgf025830m
Mimulus guttatus
mgf025830m
I
0.708
mgf023192m
Mimulus guttatus
mgf023192m
I
0.708
SELMODRAFT_449545
Selaginella moellendorffii
SELMODRAFT_449545
I
0.708
PRUPE_ppa011063mg
Prunus persica
PRUPE_ppa011063mg
I
0.708
MTR_7g075850
Medicago truncatula
MTR_7g075850
I
0.702
PGSC0003DMG400028359
Solanum tuberosum
PGSC0003DMG400028359
I
0.702
SapurV1A.0400s0280
Salix purpurea
SapurV1A.0400s0280
I
0.702
GLYMA01G02880
Glycine max
GLYMA01G02880
I
0.702
Bra038511
Brassica rapa
Bra038511
I
0.702
Bo8g101000
Brassica oleracea
Bo8g101000
I
0.702
SVP
Arabidopsis thaliana
AT2G22540
D
0.702
Thhalv10000308m.g
Eutrema salsugineum
Thhalv10000308m.g
I
0.702
SVP
Arabidopsis lyrata
fgenesh2_kg.4__174__AT2G22540.1
I
0.702
SapurV1A.0881s0020
Salix purpurea
SapurV1A.0881s0020
I
0.702
POPTR_0007s14300
Populus trichocarpa
POPTR_0007s14300
I
0.702
SapurV1A.1777s0020
Salix purpurea
SapurV1A.1777s0020
I
0.702
GLYMA09G42061
Glycine max
GLYMA09G42061
I
0.702
orange1.1g027190m.g
Citrus sinensis
orange1.1g027190m.g
I
0.702
cassava42879.valid.m1
Manihot esculenta
cassava42879.valid.m1
I
0.702
Cla014322
Citrullus lanatus
Cla014322
I
0.702
Lus10025719.g
Linum usitatissimum
Lus10025719.g
I
0.702
Cucsa.104010
Cucumis sativus
Cucsa.104010
I
0.702
e_gw1.55.13.1
Physcomitrella patens
e_gw1.55.13.1
I
0.702
Cagra.1080s0011
Capsella grandiflora
Cagra.1080s0011
I
0.702
Bostr.19427s0024
Boechera stricta
Bostr.19427s0024
I
0.702
fgenesh1_pg.scaffold_118000119
Physcomitrella patens
fgenesh1_pg.scaffold_118000119
I
0.702
Lus10035942.g
Linum usitatissimum
Lus10035942.g
I
0.702
Ca_06280
Cicer arietinum
Ca_06280
I
0.702
SELMODRAFT_450837
Selaginella moellendorffii
SELMODRAFT_450837
I
0.702
SELMODRAFT_450804
Selaginella moellendorffii
SELMODRAFT_450804
I
0.702
Carubv10023941m.g
Capsella rubella
Carubv10023941m.g
I
0.702
AMTR_s00001p00270400
Amborella trichopoda
AMTR_s00001p00270400
I
0.702
SVP
Vitis vinifera
VIT_00s0313g00070
I
0.702
AGL15
Vitis vinifera
VIT_13s0158g00100
I
0.702
TT16
Vitis vinifera
VIT_01s0011g01560
I
0.702
orange1.1g040972m.g
Citrus sinensis
orange1.1g040972m.g
I
0.702