CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
BGIOSGA027872
(
Oryza indica
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
BGIOSGA027872
T253019_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
1.000
1.000
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.766
0.766
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.723
0.723
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.723
0.723
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.723
0.723
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.702
0.702
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSGA027872-PA
MADS box
10
56
RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD
Links
Other
MADS box
family TFs
Other
Oryza indica
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OLONG_011815
Oryza longistaminata
OLONG_011815
I
1.000
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
1.000
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
1.000
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
1.000
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
1.000
OBART08G00930
Oryza barthii
OBART08G00930
I
1.000
MADS26
Oryza sativa
OS08G0112700
D
1.000
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.957
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.957
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.957
F775_26271
Aegilops tauschii
F775_26271
I
0.957
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.957
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.957
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.957
OB08G11080
Oryza brachyantha
OB08G11080
I
0.957
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.957
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.936
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.936
Si014419m.g
Setaria italica
Si014419m.g
I
0.936
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.936
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.936
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.915
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.894
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.875
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.872
PK26896.1
Cannabis sativa
PK26896.1
I
0.872
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.867
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.854
TCM_036568
Theobroma cacao
TCM_036568
I
0.854
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.854
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.851
29907.m000663
Ricinus communis
29907.m000663
I
0.851
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.842
Ca_19954
Cicer arietinum
Ca_19954
I
0.833
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.833
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.833
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.833
Cla012709
Citrullus lanatus
Cla012709
I
0.833
mgf017448m
Mimulus guttatus
mgf017448m
I
0.833
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.833
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.833
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.833
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.833
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.833
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.833
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.833
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.833
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.830
Pm004239
Prunus mume
Pm004239
I
0.830
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.830
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.812
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.812
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.812
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.812
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.809
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.809
Si012632m.g
Setaria italica
Si012632m.g
I
0.809
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.809
OB04G21020
Oryza brachyantha
OB04G21020
I
0.809
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.809
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.792
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.792
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.792
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.792
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.792
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.792
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.792
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.792
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.792
OBART04G13800
Oryza barthii
OBART04G13800
I
0.792
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.792
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.787
MDP0000316609
Malus domestica
MDP0000316609
I
0.787
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.787
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.787
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.787
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.787
F775_05799
Aegilops tauschii
F775_05799
I
0.771
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.771
MDP0000192806
Malus domestica
MDP0000192806
I
0.771
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.771
OBART04G13770
Oryza barthii
OBART04G13770
I
0.771
MDP0000193953
Malus domestica
MDP0000193953
I
0.771
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.771
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.771
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.771
Si024640m.g
Setaria italica
Si024640m.g
I
0.766
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.766
AGL12
Arabidopsis thaliana
AT1G71692
D
0.766
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.766
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.766
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.766
Bra007972
Brassica rapa
Bra007972
I
0.766
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.766
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.766
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.766
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
Bra016128
Brassica rapa
Bra016128
I
0.750
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.750
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.745
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.745
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.745
Cucsa.331900
Cucumis sativus
Cucsa.331900
I
0.745
Bra003919
Brassica rapa
Bra003919
I
0.745
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.745
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.745
PK27158.1
Cannabis sativa
PK27158.1
I
0.743
Gorai.008G018100
Gossypium raimondii
Gorai.008G018100
I
0.729
cassava26340.m1
Manihot esculenta
cassava26340.m1
I
0.729
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.729
SapurV1A.0019s1110
Salix purpurea
SapurV1A.0019s1110
I
0.729
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.727
evm.TU.supercontig_660.1
Carica papaya
evm.TU.supercontig_660.1
I
0.723
Sb08g006430
Sorghum bicolor
Sb08g006430
I
0.723
SapurV1A.1370s0060
Salix purpurea
SapurV1A.1370s0060
I
0.708
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.708
orange1.1g036652m.g
Citrus sinensis
orange1.1g036652m.g
I
0.708
SapurV1A.2345s0030
Salix purpurea
SapurV1A.2345s0030
I
0.708
Lus10042918.g
Linum usitatissimum
Lus10042918.g
I
0.708
TCM_007324
Theobroma cacao
TCM_007324
I
0.708
Traes_1BL_B44C0D37C
Triticum aestivum
Traes_1BL_B44C0D37C
I
0.708
Traes_1DL_6DA0DFC5B
Triticum aestivum
Traes_1DL_6DA0DFC5B
I
0.708
TRIUR3_24724
Triticum urartu
TRIUR3_24724
I
0.708
GLYMA08G06991
Glycine max
GLYMA08G06991
I
0.708
Traes_1AL_5F5A87122
Triticum aestivum
Traes_1AL_5F5A87122
I
0.708
Solyc05g012020.2
Solanum lycopersicum
Solyc05g012020.2
D
0.708
MLOC_65843
Hordeum vulgare
MLOC_65843
I
0.708
PGSC0003DMG400001938
Solanum tuberosum
PGSC0003DMG400001938
I
0.708
GSMUA_Achr2G11820_001
Musa acuminata
GSMUA_Achr2G11820_001
I
0.708
Solyc04g005320.2
Solanum lycopersicum
Solyc04g005320.2
I
0.708
GSMUA_Achr5G10250_001
Musa acuminata
GSMUA_Achr5G10250_001
I
0.708
F775_07497
Aegilops tauschii
F775_07497
I
0.708
Carubv10015972m.g
Capsella rubella
Carubv10015972m.g
I
0.708
Ciclev10032489m.g
Citrus clementina
Ciclev10032489m.g
I
0.708
Eucgr.I02600
Eucalyptus grandis
Eucgr.I02600
I
0.708
evm.TU.supercontig_3.196
Carica papaya
evm.TU.supercontig_3.196
I
0.708
Cagra.3821s0004
Capsella grandiflora
Cagra.3821s0004
I
0.708
Bostr.13083s0004
Boechera stricta
Bostr.13083s0004
I
0.708
29804.m001536
Ricinus communis
29804.m001536
I
0.708
Ca_14956
Cicer arietinum
Ca_14956
I
0.708
ANR1
Arabidopsis thaliana
AT2G14210
I
0.708
BRADI4G06867
Brachypodium distachyon
BRADI4G06867
I
0.708
Thhalv10022995m.g
Eutrema salsugineum
Thhalv10022995m.g
I
0.702
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.702
Pm007034
Prunus mume
Pm007034
I
0.702
mgf021543m
Mimulus guttatus
mgf021543m
I
0.702
ANR1
Vitis vinifera
VIT_18s0001g07900
I
0.702
Pavir.Ea03607
Panicum virgatum
Pavir.Ea03607
I
0.702
PRUPE_ppa010679mg
Prunus persica
PRUPE_ppa010679mg
I
0.702
Gorai.003G090800
Gossypium raimondii
Gorai.003G090800
I
0.702
PK26778.1
Cannabis sativa
PK26778.1
I
0.700