Pavir.Gb01604 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Gb01604 T258917_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.809 0.809
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.809 0.809
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.723 0.723
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.702 0.702
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.702 0.702
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.702 0.702
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01604.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Panicum virgatum TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si012632m.g Setaria italica Si012632m.g I 1.000
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.979
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.974
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.967
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.957
OB04G21020 Oryza brachyantha OB04G21020 I 0.957
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.957
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.938
OBART04G13800 Oryza barthii OBART04G13800 I 0.938
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.938
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.938
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.938
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.938
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.938
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.938
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.936
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.936
OBART04G13770 Oryza barthii OBART04G13770 I 0.936
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.936
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.917
F775_05799 Aegilops tauschii F775_05799 I 0.915
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.915
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.915
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.915
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.896
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.872
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.851
F775_26271 Aegilops tauschii F775_26271 I 0.851
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.851
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.851
OB08G11080 Oryza brachyantha OB08G11080 I 0.851
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.851
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.851
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.851
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.851
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.851
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.851
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.851
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.851
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.851
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.830
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.830
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.830
Si014419m.g Setaria italica Si014419m.g I 0.830
29907.m000663 Ricinus communis 29907.m000663 I 0.830
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.830
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.830
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.830
PK26896.1 Cannabis sativa PK26896.1 I 0.830
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.812
AGL12 Arabidopsis thaliana AT1G71692 D 0.809
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.809
Bo2g073010 Brassica oleracea Bo2g073010 I 0.809
Bo6g113110 Brassica oleracea Bo6g113110 I 0.809
Bra007972 Brassica rapa Bra007972 I 0.809
Bra016128 Brassica rapa Bra016128 I 0.809
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.809
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.809
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.809
OBART08G00930 Oryza barthii OBART08G00930 I 0.809
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.809
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.809
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.809
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.809
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.809
MADS26 Oryza sativa OS08G0112700 D 0.809
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.809
TCM_036568 Theobroma cacao TCM_036568 I 0.809
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.809
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.809
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.809
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.809
MDP0000316609 Malus domestica MDP0000316609 I 0.809
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.809
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.809
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.809
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.809
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.792
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.792
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.792
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.792
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.792
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.792
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.792
Ca_19954 Cicer arietinum Ca_19954 I 0.792
Cla012709 Citrullus lanatus Cla012709 I 0.792
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.792
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.792
mgf017448m Mimulus guttatus mgf017448m I 0.792
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.792
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.792
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.792
Bo6g094120 Brassica oleracea Bo6g094120 I 0.787
Bra003919 Brassica rapa Bra003919 I 0.787
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.787
Pm004239 Prunus mume Pm004239 I 0.787
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.787
MDP0000192806 Malus domestica MDP0000192806 I 0.787
MDP0000193953 Malus domestica MDP0000193953 I 0.787
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.787
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
Si024640m.g Setaria italica Si024640m.g I 0.745
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.745
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.745
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.745
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.745
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
MDP0000179718 Malus domestica MDP0000179718 I 0.727
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.723
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.723
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.723
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.723
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.723
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.723
OB03G11760 Oryza brachyantha OB03G11760 I 0.723
OBART03G01800 Oryza barthii OBART03G01800 I 0.723
OBART04G25610 Oryza barthii OBART04G25610 I 0.723
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.723
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.723
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.723
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.723
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.723
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.723
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.723
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.723
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.723
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.723
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.723
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.723
MADS50 Oryza sativa OS03G0122600 D 0.723
MADS31 Oryza sativa OS04G0614100 I 0.723
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.723
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.723
Si038299m.g Setaria italica Si038299m.g I 0.723
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.723
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.723
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.723
PK19764.1 Cannabis sativa PK19764.1 I 0.723
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.722
GSMUA_Achr11G21460_001 Musa acuminata GSMUA_Achr11G21460_001 I 0.708
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.708
PRUPE_ppa019906mg Prunus persica PRUPE_ppa019906mg I 0.708
Pm024524 Prunus mume Pm024524 I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.702
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.702
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.702
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.702
GSMUA_Achr11G19540_001 Musa acuminata GSMUA_Achr11G19540_001 I 0.702
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.702
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.702
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.702
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.702
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.702
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.702
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.702
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.702
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.702
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.702
Ca_16423 Cicer arietinum Ca_16423 I 0.702
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.702
mgf006616m Mimulus guttatus mgf006616m I 0.702
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.702
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.702
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.702
MDP0000135652 Malus domestica MDP0000135652 I 0.702
MDP0000144516 Malus domestica MDP0000144516 I 0.702
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.702
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.702
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.702
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.702
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.702
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.702