Pavir.J14267 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J14267 T258952_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J14267.1.p MADS box 10 55

Links

Other MADS box family TFs
Other Panicum virgatum TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA003304 Oryza indica BGIOSGA003304 N 0.750
F775_16483 Aegilops tauschii F775_16483 N 0.783
GRMZM5G839969 Zea mays GRMZM5G839969 N 0.870
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.891
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.717
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.742
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.761
MLOC_51323 Hordeum vulgare MLOC_51323 N 0.717
OB01G21750 Oryza brachyantha OB01G21750 N 0.723
OB03G33030 Oryza brachyantha OB03G33030 N 0.717
OBART01G12050 Oryza barthii OBART01G12050 N 0.761
OBART03G24330 Oryza barthii OBART03G24330 N 0.723
OGLUM01G13490 Oryza glumaepatula OGLUM01G13490 N 0.761
OGLUM03G25150 Oryza glumaepatula OGLUM03G25150 N 0.723
OMERI03G22160 Oryza meridionalis OMERI03G22160 N 0.723
ONIVA01G14280 Oryza nivara ONIVA01G14280 N 0.750
ONIVA03G25700 Oryza nivara ONIVA03G25700 N 0.723
OPUNC01G11730 Oryza punctata OPUNC01G11730 N 0.750
OPUNC03G22520 Oryza punctata OPUNC03G22520 N 0.717
ORGLA01G0101700 Oryza glaberrima ORGLA01G0101700 N 0.761
ORGLA03G0226500 Oryza glaberrima ORGLA03G0226500 N 0.723
ORUFI01G13020 Oryza rufipogon ORUFI01G13020 N 0.750
ORUFI03G24940 Oryza rufipogon ORUFI03G24940 N 0.739
Pavir.Aa01999 Panicum virgatum Pavir.Aa01999 N 0.826
Pavir.Ab01824 Panicum virgatum Pavir.Ab01824 N 0.783
Pavir.Eb00487 Panicum virgatum Pavir.Eb00487 N 0.756
Pavir.Ib03850 Panicum virgatum Pavir.Ib03850 N 0.870
Pavir.J40580 Panicum virgatum Pavir.J40580 N 0.800
Si019470m.g Setaria italica Si019470m.g N 0.783
TRAES3BF073700150CFD_g Triticum aestivum TRAES3BF073700150CFD_g N 0.717