POPTR_0012s08360 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0012s08360 T278424_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.672 0.753
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s08360.1 Myb 196 242
POPTR_0012s08360.1 Myb 248 293

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29681.m001315 Ricinus communis 29681.m001315 N 0.719
29917.m001977 Ricinus communis 29917.m001977 I 0.667
30147.m013937 Ricinus communis 30147.m013937 I 0.717
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.736
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.682
Bo3g018490 Brassica oleracea Bo3g018490 I 0.674
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.672
Bra006744 Brassica rapa Bra006744 I 0.674
Bra025299 Brassica rapa Bra025299 I 0.669
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.672
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.672
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.786
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.747
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.719
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.717
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.746
Ca_07482 Cicer arietinum Ca_07482 I 0.675
Ca_17087 Cicer arietinum Ca_17087 I 0.681
Ca_17294 Cicer arietinum Ca_17294 I 0.735
Ca_19427 Cicer arietinum Ca_19427 I 0.671
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.719
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.737
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.729
Cla008304 Citrullus lanatus Cla008304 N 0.706
Cla010586 Citrullus lanatus Cla010586 I 0.681
Cla019490 Citrullus lanatus Cla019490 I 0.752
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.703
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.755
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.761
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.723
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.712
F775_22212 Aegilops tauschii F775_22212 I 0.661
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.683
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.764
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.780
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.706
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.701
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.722
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.740
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.722
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.668
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.737
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.693
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.675
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.722
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N 0.678
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.670
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.667
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.694
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.680
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.670
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.690
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.688
MDP0000215359 Malus domestica MDP0000215359 I 0.781
MDP0000319656 Malus domestica MDP0000319656 I 0.716
mg025334m Mimulus guttatus mg025334m I 0.679
mgf023372m Mimulus guttatus mgf023372m I 0.684
mgf024290m Mimulus guttatus mgf024290m I 0.722
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.693
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.679
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.691
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.695
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.662
MYB118 Arabidopsis thaliana AT3G27785 D 0.672
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.672
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.685
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.789
OB06G13860 Oryza brachyantha OB06G13860 I 0.661
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.729
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.737
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.682
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.682
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.676
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.662
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.734
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.705
Pm000541 Prunus mume Pm000541 I 0.719
Pm015681 Prunus mume Pm015681 I 0.706
Pm024743 Prunus mume Pm024743 I 0.789
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.715
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.667
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.714
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.775
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.719
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.706
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.789
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N 0.672
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.672
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.731
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.694
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.765
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.673
Si039046m.g Setaria italica Si039046m.g I 0.682
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.750
TCM_012087 Theobroma cacao TCM_012087 I 0.764
TCM_041651 Theobroma cacao TCM_041651 N 0.694
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.681
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.681
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.681
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.661
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.661
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.661