Thhalv10021052m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10021052m.g T290115_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.909 1.000
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.909 1.000
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.909 1.000
MYB46
M00877_2.00 		Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN		 PBM
Franco-Zorrilla et al.(2014)
MYB46 		0.803 0.849
MYB46
M11046_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB46_Q6 		0.803 0.849
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.704 0.731
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.704 0.731
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.704 0.731
MYB61
M07002_2.00 		Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND		 Dap-seq
OMalley et al.(2016)
MYB61_col_a 		0.698 0.720
MYB61
M07003_2.00 		Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN		 Dap-seq
OMalley et al.(2016)
MYB61_colamp_a 		0.698 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021052m Myb 33 80
Thhalv10021052m Myb 86 131

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

606 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022471 Oryza indica BGIOSGA022471 I
BGIOSGA028781 Oryza indica BGIOSGA028781 I
Bo6g086740 Brassica oleracea Bo6g086740 I
Bo6g119120 Brassica oleracea Bo6g119120 I
Bo8g102870 Brassica oleracea Bo8g102870 I
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I
Bra003780 Brassica rapa Bra003780 I
Bra031069 Brassica rapa Bra031069 I
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I
Carubv10011394m.g Capsella rubella Carubv10011394m.g I
Carubv10020965m.g Capsella rubella Carubv10020965m.g I
cassava10604.m1 Manihot esculenta cassava10604.m1 I
ERF017 Arabidopsis thaliana AT1G19210 D
ERF018 Arabidopsis thaliana AT1G74930 D
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I
F775_23111 Aegilops tauschii F775_23111 I
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I
GRMZM2G097081 Zea mays GRMZM2G097081 I
GRMZM2G163745 Zea mays GRMZM2G163745 I
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I
LPERR02G28660 Leersia perrieri LPERR02G28660 I
LPERR08G14000 Leersia perrieri LPERR08G14000 I
mgf017314m Mimulus guttatus mgf017314m N
mgf021940m Mimulus guttatus mgf021940m I
mgf024162m Mimulus guttatus mgf024162m I
MTR_3g105480 Medicago truncatula MTR_3g105480 I
MTR_3g105510 Medicago truncatula MTR_3g105510 I
OB06G15740 Oryza brachyantha OB06G15740 N
OB08G24280 Oryza brachyantha OB08G24280 I
OBART06G06190 Oryza barthii OBART06G06190 I
OBART08G16950 Oryza barthii OBART08G16950 I
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I
OMERI03G32210 Oryza meridionalis OMERI03G32210 I
OMERI06G09430 Oryza meridionalis OMERI06G09430 N
ONIVA08G18470 Oryza nivara ONIVA08G18470 I
OPUNC08G14840 Oryza punctata OPUNC08G14840 I
ORA47 Vitis vinifera VIT_04s0008g02230 I
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I
OS08G0454000 Oryza sativa OS08G0454000 I
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I
Pavir.J00593 Panicum virgatum Pavir.J00593 I
PGSC0003DMG400023295 Solanum tuberosum PGSC0003DMG400023295 N
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I
Si008104m.g Setaria italica Si008104m.g I
Si015027m.g Setaria italica Si015027m.g I
Si019636m.g Setaria italica Si019636m.g I
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I
Solyc07g042230.1 Solanum lycopersicum Solyc07g042230.1 N
TCM_037486 Theobroma cacao TCM_037486 I
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I