PGSC0003DMG400026568 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400026568 T344272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.905 0.471
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.908 0.534
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.903 0.471
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.886 0.466
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.884 0.413
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.866 0.397
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.871 0.505
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.871 0.505
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.852 0.388
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.852 0.421
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.853 0.456
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.852 0.421
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.853 0.456
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.853 0.456
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.852 0.437
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400068331 TCP 34 162
PGSC0003DMT400068332 TCP 34 184

Links

Other TCP family TFs
Other Solanum tuberosum TFs

385 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA009862 Oryza indica BGIOSGA009862 N
BGIOSGA018468 Oryza indica BGIOSGA018468 N
BGIOSGA020445 Oryza indica BGIOSGA020445 N
Bo4g107870 Brassica oleracea Bo4g107870 N
Bo4g137780 Brassica oleracea Bo4g137780 N
Bo6g067130 Brassica oleracea Bo6g067130 N
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N
BRADI3G16050 Brachypodium distachyon BRADI3G16050 N
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N
Carubv10008021m.g Capsella rubella Carubv10008021m.g N
Carubv10019720m.g Capsella rubella Carubv10019720m.g N
cassava11655.m1 Manihot esculenta cassava11655.m1 N
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N
Cucsa.036140 Cucumis sativus Cucsa.036140 N
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N
GLYMA13G22855 Glycine max GLYMA13G22855 N
GLYMA13G22881 Glycine max GLYMA13G22881 N
GLYMA17G11981 Glycine max GLYMA17G11981 N
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N
Lus10032337.g Linum usitatissimum Lus10032337.g N
MDP0000197332 Malus domestica MDP0000197332 N
MDP0000394762 Malus domestica MDP0000394762 N
mgf025287m Mimulus guttatus mgf025287m N
MLOC_42818 Hordeum vulgare MLOC_42818 N
MLOC_66012 Hordeum vulgare MLOC_66012 N
MLOC_75540 Hordeum vulgare MLOC_75540 N
OB03G40190 Oryza brachyantha OB03G40190 N
OB08G27840 Oryza brachyantha OB08G27840 N
OB08G27850 Oryza brachyantha OB08G27850 N
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N
OS03G0733400 Oryza sativa OS03G0733400 N
OS05G0583200 Oryza sativa OS05G0583200 N
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N
Pavir.J05554 Panicum virgatum Pavir.J05554 N
Pavir.J31170 Panicum virgatum Pavir.J31170 N
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N
PK27100.1 Cannabis sativa PK27100.1 N
Pm013703 Prunus mume Pm013703 N
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N
Sb01g009090 Sorghum bicolor Sb01g009090 N
Sb02g043380 Sorghum bicolor Sb02g043380 N
Si000431m.g Setaria italica Si000431m.g N
Si000761m.g Setaria italica Si000761m.g N
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N
TCM_027266 Theobroma cacao TCM_027266 N
TCM_038144 Theobroma cacao TCM_038144 N
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N
TRIUR3_10927 Triticum urartu TRIUR3_10927 N
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N