cassava41173.m1 (Manihot esculenta)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 cassava41173.m1 T351459_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtGRF6
M02545_2.00 		Arabidopsis thaliana
NNNNYDNN
NNHRNNNN		 PBM
Weirauch et al.(2014)
pTH7356 		0.767 0.767
AtGRF6
M07369_2.00 		Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN		 Dap-seq
OMalley et al.(2016)
AtGRF6_col_a 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41173.m1 WRC 117 159

Links

Other WRC family TFs
Other Manihot esculenta TFs

567 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_2296 Arabidopsis lyrata Al_scaffold_0008_2296 N 0.000
BGIOSGA017853 Oryza indica BGIOSGA017853 N 0.000
BRADI2G22130 Brachypodium distachyon BRADI2G22130 N 0.000
evm.TU.supercontig_2.268 Carica papaya evm.TU.supercontig_2.268 N 0.000
F775_06506 Aegilops tauschii F775_06506 N 0.000
gene28054-v1.0-hybrid Fragaria vesca gene28054-v1.0-hybrid N 0.000
GLYMA02G40400 Glycine max GLYMA02G40400 N 0.000
LPERR05G16310 Leersia perrieri LPERR05G16310 N 0.000
MTR_2g102450 Medicago truncatula MTR_2g102450 N 0.000
OB05G28010 Oryza brachyantha OB05G28010 N 0.000
OBART05G20480 Oryza barthii OBART05G20480 N 0.000
OGLUM05G21650 Oryza glumaepatula OGLUM05G21650 N 0.000
OMERI05G18410 Oryza meridionalis OMERI05G18410 N 0.000
ONIVA02G25740 Oryza nivara ONIVA02G25740 N 0.000
OPUNC05G18160 Oryza punctata OPUNC05G18160 N 0.000
orange1.1g039664m.g Citrus sinensis orange1.1g039664m.g N 0.000
ORGLA05G0178700 Oryza glaberrima ORGLA05G0178700 N 0.000
ORUFI05G21790 Oryza rufipogon ORUFI05G21790 N 0.000
OS05G0481400 Oryza sativa OS05G0481400 N 0.000
Pavir.J00951 Panicum virgatum Pavir.J00951 N 0.000
Pavir.J04157 Panicum virgatum Pavir.J04157 N 0.000
PDK_20s1595621g002 Phoenix dactylifera PDK_20s1595621g002 N 0.000
PGSC0003DMG400020648 Solanum tuberosum PGSC0003DMG400020648 N 0.000
PK16911.1 Cannabis sativa PK16911.1 N 0.000
Pm000222 Prunus mume Pm000222 N 0.000
Sb09g023630 Sorghum bicolor Sb09g023630 N 0.000
Si022916m.g Setaria italica Si022916m.g N 0.000
Solyc06g007530.2 Solanum lycopersicum Solyc06g007530.2 N 0.000
Traes_1AL_C340A8E74 Triticum aestivum Traes_1AL_C340A8E74 N 0.000
Traes_1BL_A8FC9D468 Triticum aestivum Traes_1BL_A8FC9D468 N 0.000
Traes_1DL_1806CFE5F Triticum aestivum Traes_1DL_1806CFE5F N 0.000
Traes_1DL_1806CFE5F1 Triticum aestivum Traes_1DL_1806CFE5F1 N 0.000
TRIUR3_13028 Triticum urartu TRIUR3_13028 N 0.000
VIT_06s0004g08270 Vitis vinifera VIT_06s0004g08270 N 0.000